RNA id: CI01000360_00239322_00269102.mRNA


Basic Information

Item Value
RNA id CI01000360_00239322_00269102.mRNA
length 2481
RNA type mRNA
GC content 0.49
exon number 18
gene id CI01000360_00239322_00269102
representative True

Chromosome Information

Item Value
chromosome id CI01000360
NCBI id null
chromosome length 778440
location 239126 ~ 269188 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATATAAACGAGGCAAAATCCACAATACTAGCTGTTTGACTTAAATCCATTCATCCATCCATTCTCCAAACCGATTGTCTTCAGTAGGGAATATCCCAGCGTCTCGGGCCTGGATAATCCATCACAGTGTTGACTCTAATTTCTCATTGTGCTGTAGAGTGAGCTGATGTTTTTACCTCATGGATATTTGTCATTATGATCCTTACCTTGATCTCAGTAGAGGAGAGAAAGATCAATGAGAGTGTGTCTATGAGAGTGATGAGGAGGATCACACCTTGTTCTGTTCATGGTTTTTTACAGGCGATTCAGATGAAGTGGTACCTACACCAAGGTCATGTGTTTGATTCCCAGAAAACACTAGAACGACAGAATGCACTGTTAGTTGTGTTACTGCAGTGCCATCTTCTTATTCTGAGCGTGTCGTATTTTATTCATAAATCCAGAGGTGGAAGAGATGATGGTCGAGCGGAGGAGAGGGAGTCGGACCGGAGAGACCGAGAGGAGAAAAAAAAGAGAAGAGCATGCAAAAGTTCTTTGTTTTGGCTCCGTCTGCAGGGCCGCACGTGGCCTGAGAGCGGCGTCGTTCCTGACACGCCTAATGATGTACGACTGCATTTGAATCACTGGTCCCTGTGTTTGACAGTGTGTGGTAATTACCTGGCTCCCCTGCTTGATCGTGTAAACTCTTCCAGAACCAAGGGAGATACAGTCAAATGGGAAGATATCAGCAGTATCACGCGCACTTTTCCCGCGCCGCGGCAGGCTCAATTCTATAAGGATGCGATCGACTTACCCACATTTATCCGATCACGCGTTTGTATAGAAATGGTCCTCATCTTCTTCCTCACGATGAAGCAGTGCATTGTGTTTTATTGTGACTTTCTGCTTCTCTTTCAGTACGATGAGTTGGCTCATTACGGCGGCATGGACGGGGTGGGTATGTACGGAGATCCTCACGCGCCTCGGCCGCTCCCGCAGGTCCATCATCTGAATCACGGACCGCCGCTCCACGCCAGCCAGCATTACGGCACACATGCCCCCCATCCCAATGTCATGCCCACCAGCATGGGCTCGGCTGTCAACGACGTGTTAAAGAGGGATAAAGATCAAATTTACGGTCACCCTCTGTTTCCTCTGCTGGCTCTGGTCTTTGAGAAGTGCGAGCTGGCCACATGCACTCCCCGCGAGCCCGGGGTGGCGGGAGGAGACGTGTGCTCCTCCGACTCCTTCAACGAGGACATCGCTGTCTTCGCCAAACAGGTCCGCGCAGAAAAACCTTTATTTTCTTCAAATCCAGAATTGGATAATTTGATGATACAAGCCATACAAGTATTACGGTTTCATCTTTTGGAGTTAGAAAAGGTGCACGAACTCTGCGACAATTTCTGCCATCGGTACATCAGTTGTTTGAAAGGAAAAATGCCCATAGATTTAGTGATTGATGAACGGGATGGCAGCTCAAAATCAGACCACGAGGAACTCTCGGGATCTTCAACTAACTTAGCCGATCATATAATTGGCAGTTTCGCTTTGAATAGTCATTCTGATGCTTCAGACCGTCCCTTTAACATGTTTTGGGAGCAGTTGTGTAATTACATGTTAAATGCAGCAGAACTGCGTGTGGAGCAGACGCACAGAAGGTCAGGGGCTGGAGATGCGCATGTGTCAGCATTCGCAGCCATTCCCGATCCGACATGCGTTTTTATGCAAAATCCAGCGTCCTGGAGAGATCACGACGACGCCACGTCCACACACTCGGCCGGCACGCCGGGACCCTCCAGCGGAGGACACGCATCGCAGAGCGGAGACAACAGCAGTGAACAAGTTATCGACTCTCTCACACTGGATCCAGTAACGGCTGGTCGATACGGGCTAACACACTTACGGTCTGGACCGACTGAGATGTCAGACTTTATTCTCTTCTGTAATGTTAAAGTTTATGCCAGAAAGAGACAGAAAGACAAAAAAGTAAAAGTTAAGCAGCACTACGGGCCTTACGCCCTTCCGCTCCCTAATCCCTCCCGCCTCCTCCCTCCAAACACTCAGAATGCTCGTGAAGGGCTAGCGTTTGGCGATGTGGTCTCTCAAGCGCGTCACAGCGCCGATGCCCTACAGATAAGCTCATTTTATAGTCTGATTTCCGCTCCCTCGTGTGCCATAATGAGTCGTCGAGCATGGGGGAGCGTGTCGGCGAAGAGCACCAGTCCATCCGTCCGTCTGTCCGTGTGCCCATCCTGTTTGAGGAGATGGGGATGGAGGGGTTTGACGGCGAATGGAGGCTTGTACTCACGCACACATAAGCCATTAAAAAAGGATGAGGAAATGAGGCTGCTGTTCAAACTCTGCCTCCTGGTCTGTTCAGGTAGCTCCAATTACACGCTTCCCATGTTTTAAGGCTGTTGAATGTTAAATGCTGCCTCCTCTCTTCATTTCCTCTGATCCTATACACCCTTGAAATGTATTTCATAGCGAAACACGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU594266 lncRNA upstream 36189 202513 ~ 202937 (+) True G518118
TU594253 lncRNA upstream 66978 171928 ~ 172148 (+) True G518105
TU594156 lncRNA upstream 126064 112694 ~ 113062 (+) True G518013
TU594131 lncRNA upstream 138226 64327 ~ 100900 (+) True G517989
TU594299 lncRNA downstream 23064 292252 ~ 392209 (+) True G518142
TU594301 lncRNA downstream 32607 301795 ~ 309690 (+) True G518144
TU594471 lncRNA downstream 410394 679582 ~ 679807 (+) True G518309
CI01000360_00045139_00056179.mRNA mRNA upstream 182780 45139 ~ 56346 (+) True CI01000360_00045139_00056179
CI01000360_00032742_00035125.mRNA mRNA upstream 203977 32742 ~ 35149 (+) True CI01000360_00032742_00035125
CI01000360_00276724_00299803.mRNA mRNA downstream 7149 276337 ~ 299868 (+) True CI01000360_00276724_00299803
CI01000360_00313760_00316560.mRNA mRNA downstream 44083 313271 ~ 316840 (+) True CI01000360_00313760_00316560
CI01000360_00461890_00465387.mRNA mRNA downstream 192515 461703 ~ 465569 (+) True CI01000360_00461890_00465387
CI01000360_00577462_00621640.mRNA mRNA downstream 308274 577462 ~ 621645 (+) True CI01000360_00577462_00621640
CI01000360_00631283_00631570.mRNA mRNA downstream 360912 630100 ~ 631892 (+) True CI01000360_00631283_00631570

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023342 False 1221 mRNA 0.55 12 NC_007128.7 52823138 ~ 52915741 (+)
bowfin (Amia calva) AMCG00000232 True 750 mRNA 0.58 7 CM030141.1 8108618 ~ 8120105 (+)