RNA id: TCONS_00021471


Basic Information

Item Value
RNA id TCONS_00021471
length 492
RNA type mRNA
GC content 0.52
exon number 3
gene id XLOC_010986
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43353106 ~ 43356018 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCATTGCCTGAGCAGGACGCCCAGGTCATATCTGCTGAACTCCTACAGTGATCTACAGGAGACTGATGAGCTTTCCAGAGAATCGTATGAAGCCACCTGGTTAGACCTGCTGATGGAGACCAGGCCAGAATACAAGATGACTCTTGCTGAGAAGGACTCCATGAAAAAGGAGAGCTACGAAAGCAAGCAGGTGGTTCACTTCACAGTGCGCAGATTCCCAAACCAGACCATTCAGATGGGCAGAGACAGGGAGCCAATGCAGGAGTATCGTTTACCATACAAAAACATTCTCCCAATACCAATATTTGTGCCCAGAGACGTGACTCAGCCTGACGTGACCCGCTCGCCCTCACCCTCAGTCAAATCCAGCACAGACACCGAGGCTAGTTTAAGCGGACCAATGGTAATCCAACCCAGGAGTCCAGACTTCAGAGCGTCCAGCCTCATCTCTCCACCGCGGGACACCCTCCGCTTCCAGAGACGAGAGTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000181683

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022228 lncRNA downstream 228879 43119113 ~ 43124227 (-) True XLOC_010981
TCONS_00021459 lncRNA downstream 327219 43022580 ~ 43025887 (-) True XLOC_010978
TCONS_00021453 lncRNA downstream 341679 43003153 ~ 43011427 (-) False XLOC_010977
TCONS_00022227 lncRNA downstream 359214 42974547 ~ 42993892 (-) True XLOC_010976
TCONS_00021450 lncRNA downstream 359242 42974547 ~ 42993864 (-) False XLOC_010976
TCONS_00022229 lncRNA upstream 2907 43358925 ~ 43368871 (-) True XLOC_010987
TCONS_00021474 lncRNA upstream 232625 43588643 ~ 43742343 (-) True XLOC_010988
TCONS_00021834 lncRNA upstream 798466 44154484 ~ 44159865 (-) True XLOC_010992
TCONS_00022230 lncRNA upstream 824757 44180775 ~ 44289374 (-) False XLOC_010993
TCONS_00022231 lncRNA upstream 824757 44180775 ~ 44289423 (-) False XLOC_010993
TCONS_00021470 mRNA downstream 8247 43335696 ~ 43344859 (-) True XLOC_010985
TCONS_00021469 mRNA downstream 17192 43319342 ~ 43335914 (-) False XLOC_010985
TCONS_00021468 mRNA downstream 35179 43291709 ~ 43317927 (-) True XLOC_010984
TCONS_00021467 mRNA downstream 119597 43227724 ~ 43233509 (-) True XLOC_010983
TCONS_00021466 mRNA downstream 213849 43135965 ~ 43139257 (-) True XLOC_010982
TCONS_00021475 mRNA upstream 323249 43679267 ~ 43679611 (-) True XLOC_010990
TCONS_00021476 mRNA upstream 462878 43818896 ~ 43971258 (-) False XLOC_010991
TCONS_00021477 mRNA upstream 462879 43818897 ~ 44127326 (-) False XLOC_010991
TCONS_00021478 mRNA upstream 463494 43819512 ~ 44127387 (-) False XLOC_010991
TCONS_00021479 mRNA upstream 597198 43953216 ~ 44127307 (-) False XLOC_010991
TCONS_00021462 other downstream 317815 43028083 ~ 43035291 (-) False XLOC_010979
TCONS_00021446 other downstream 458596 42888197 ~ 42894510 (-) True XLOC_010971
TCONS_00021444 other downstream 478397 42873740 ~ 42874709 (-) True XLOC_010970
TCONS_00021443 other downstream 480534 42869054 ~ 42872572 (-) True XLOC_010969
TCONS_00021435 other downstream 978926 42321927 ~ 42374180 (-) False XLOC_010965
TCONS_00021472 other upstream 61614 43417632 ~ 43631241 (-) False XLOC_010988
TCONS_00021473 other upstream 199446 43555464 ~ 43555579 (-) True XLOC_010989
TCONS_00021499 other upstream 1517526 44873544 ~ 44877319 (-) True XLOC_011000
TCONS_00021503 other upstream 1662406 45018424 ~ 45018540 (-) True XLOC_011005
TCONS_00021509 other upstream 1748595 45104613 ~ 45106574 (-) True XLOC_011010

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_02981155_02982628.mRNA True 944 mRNA 0.44 2 CI01000027 2981011 ~ 2982885 (+)