RNA id: TCONS_00000196


Basic Information

Item Value
RNA id TCONS_00000196
length 1906
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_000104
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8694196 ~ 8702684 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGAAGTGCAAGCACCGTTCGCTATGCAGACGTAAACTAACAGCTGTCGATGAGGCCGCCGCCGACAAACCACTTCGGCCGGGTTTAAACGCCACGGAGAACTTTTCCAGCGAACGTTAGAGCATCACAGCAGCGGTTTACGTGTTTTTGTGGCCATGGAGGAGAAGAAGGAGGAGGGGGAAGCGGAGATCCAGGAACACGGACCCGAGCACTGGTTCTCCAAATGGGAGCGGCAGTGCCTAGCCGAGGCCGAGCAGGAGGAACCGGCCGAGGAGGAGACCGATCAGAGCCAACAAAAACTCTGGCATCTTTTCCAAAACTCCGCCACCGCCGTCGCACAACTGTATAAAGATAGAGTATGTCAACAACAACAGGGCCTTTCCTTGTGGGTTCCCTTTCAAAATGCTGCAACTGCCGTCACTAACCTATACAAAGaGAGTGTTGATGCCCATCAGCGGAGTTATGAGCTGGGTATTCAGATAGGCCATCAGAGGAGAAATAAAGATGTCCTGGCGTGGGTGAAGAAACGGAGGCGGACTATTCGGCGTGAGGATCTTATCAGCTTCCTCTGTGGTAAAGCCCCACCGCCACGTAGCTCCAGGGCTCCGCCAAGACTTGCAATGGTGTCACCAAGCCGACCCACGCCCTCGGAGACGAGTTCATCTGTAGAAACTGACCTGCAGCCTTTCAGGGAGGCCATTGCCCTGCACGGTCTAAGTGGAGCCATGGCGAGTATCAGTATGCGCTCCGGAGCTCCAGGTTCACCTACACACCTGAGCGCCAGCTCCGCCCCCAGTCGCCGCAGAAACGGTCTCCACGACGTAGACCTCAACACTTTCATTGCCGAGGAGATGGCGCTCCACCTCGACAACGGAACTCGGAAACGAAGCTCCGCCCAGTGCAATGATGTCATAACAGACTCTCCCACTCACAAACGCAATAGGATGATCTGAGCTCTTAAGTAAACAGAAACAACACCATGCGTGAGAAAAAAAATGCCACTCCTCAGTCATCCTCCCATCTTTATTCAGACCAGGAAATAAAAGCAGCCAATAACAGTGCTCACCACAGCCCAGCACATCTCTGATTGGTCTACAGAGCCCTGTTGAGGTCATCGGTGGGAGACGGTGTTCAGTGCAGAGGCCTAAGTGCCCTTCCATAGGATCCTGTCGACAAACACACAACCCTCATTCACTATATTGCTGTGTgagttgattgtgtgtgtgtgtgtgtgtgagtgtgtgttattATGGCTGAACTGAGACGTGATCGAACGCAGGAACAAGAAAACATTTTTGTGTGCATGTTCGCAACATAATGAGCAACGTCTGTATGATTGCGTGTGTATACAAGTacttggtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgactgaTGAGTTTGTgttagagtgtgtttgtgtgtgtggtaccTGCCTCTTCCTCCAGCACCTGTCACTGCCCCAGCTCTCAGTTACCATGCTGCGGCTTTCAAAagcaacaaatgttttattttaatattattgacaatgtttttcatgacttttctttctctctcttttgttttgCCTTCTCTTAATTCTGCTCGAGCAGCAGGCACAAGTGCTGTGATGGCTATACATCCGCTGTCATGCACATCTCTCAATCATTTTTGAATCTCTTCAATAATTTCCCTTCGTTCTTCCTGAGCATCCATCTTCTTTTCATTCATCCTCTTTTGTCATTCTTCCCCAGCACCTTTATCTCCAGTGTAACATTATGTCATGTAAATACCTGTAGGTGCTGACATAGACTTGTGgtacatattgtaaaaaaaaaaaaaaaaaaagctgtgcagaGACCATTGAATTGTTAATGTACAATAATGATTCTTGCATTAAAGAAATCAAGCTTTTAACTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000025604

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000192 lncRNA upstream 103560 8587230 ~ 8590636 (+) False XLOC_000100
TCONS_00003027 lncRNA upstream 103560 8587345 ~ 8590636 (+) False XLOC_000100
TCONS_00003028 lncRNA upstream 103560 8588232 ~ 8590636 (+) True XLOC_000100
TCONS_00000190 lncRNA upstream 116922 8575307 ~ 8577274 (+) True XLOC_000098
TCONS_00003026 lncRNA upstream 119139 8573777 ~ 8575057 (+) True XLOC_000097
TCONS_00003029 lncRNA downstream 248190 8950874 ~ 8965939 (+) False XLOC_000105
TCONS_00000198 lncRNA downstream 248190 8950874 ~ 8965939 (+) False XLOC_000105
TCONS_00003030 lncRNA downstream 258320 8961004 ~ 8965939 (+) True XLOC_000105
TCONS_00003031 lncRNA downstream 264795 8967479 ~ 8976422 (+) True XLOC_000106
TCONS_00003032 lncRNA downstream 426702 9129386 ~ 9132490 (+) True XLOC_000111
TCONS_00000195 mRNA upstream 23710 8662530 ~ 8670486 (+) True XLOC_000103
TCONS_00000194 mRNA upstream 83632 8601935 ~ 8610564 (+) True XLOC_000102
TCONS_00000193 mRNA upstream 97181 8593560 ~ 8597015 (+) True XLOC_000101
TCONS_00000191 mRNA upstream 108130 8579197 ~ 8586066 (+) True XLOC_000099
TCONS_00000189 mRNA upstream 154146 8534698 ~ 8540050 (+) True XLOC_000096
TCONS_00000199 mRNA downstream 281384 8984068 ~ 8988504 (+) False XLOC_000107
TCONS_00000200 mRNA downstream 283454 8986138 ~ 8988504 (+) True XLOC_000107
TCONS_00000201 mRNA downstream 302035 9004719 ~ 9064912 (+) False XLOC_000108
TCONS_00000202 mRNA downstream 302068 9004752 ~ 9044347 (+) True XLOC_000108
TCONS_00000203 mRNA downstream 368640 9071324 ~ 9074479 (+) True XLOC_000109
TCONS_00000154 other upstream 1630253 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 1906392 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000134 other upstream 2508664 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000123 other upstream 3192112 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000121 other upstream 3243752 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000208 other downstream 451410 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 452309 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 515964 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000230 other downstream 1349090 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 1349100 10051784 ~ 10058057 (+) False XLOC_000126

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_00509051_00514671.mRNA True 1450 mRNA 0.52 4 CI01000300 508476 ~ 514751 (+)