RNA id: TCONS_00023878


Basic Information

Item Value
RNA id TCONS_00023878
length 2115
lncRNA type intronic
GC content 0.39
exon number 2
gene id XLOC_012116
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 24695594 ~ 24717927 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTATTGCTTTATTCAGCAAatttgttttcaacatttatGATGTTTTCTGCAATTACATACATTACAATGTTTCCTGTGCATTAAAGTAgcattttaaatgttacaataTTACTGCTGTTCCTTGAAGAATTTTTACAAACCCGAAACATTCGTTCACCTTTATCTTATATTATCTTTAGATTGCTGGCCTTACAAGACACAGTGGGTCACCTCTTGCGTACATGCGTATTTTATCCTCTCAGATATATCTGTTTATTCTCATTATATACAAGATGataaatgttcatacattatgattttaaaatgtatgtgtaAAATACCTTAACAGACCAAGATGATTAGAGGATACCTATTGGTATCTTAAAGAACCTATAGCTGTTTTACAAATAAGAAATGACTATAAGTACTTACTAGATAAGAAGGCCAGCCCAATTACTGTGAAAAAGTTATATTCATCGAAAAAGAAAAGGCTGTTTTACAGGTACCACAGCGCCTTCGGTCGTGAGAGTGGAGAACTGCAGCTCAACCTCAAACACTCGCGTCCGCGCACAGCAGTGACGTCATCGCAGTGTCCAGGAGCCTTTGCGCGTTGATGTTTATCGTGTTTTCGCAGCTAAAATGAAATTAAGTAACTTCGAGAAGACGTTGGCGGAGAACGTACGGCGACACAGGATCATCTATGACCCGAATCTGCACGATCATGGTGACCTTGAGTTGACACAAAGTGCGTGGAACGATATCTCCGCCGCCACGGGGAAGAACGAAGCGGTGTGCCGTAAAGCGTGGAAAAATCTAAGAGACAAGTTTGTGCGGATCAAGAGGAAGATCCACACGAACAGCAAGGATCCAGGCTCATACAGGAAGATCGTGGCAGAGTTGGGGTGGTTGTGCCAATATGTTAAACATCGAGAAAAAAGTCTGAATGCGAAGGATGGATGTAAAGGAGTCACGTTTGAGGAGTTCATGAAGACAGACAACTTACAGATGTCCTCAGCATCAGGAACATCAGAGACTGGGACTTCAGACAACCCTTCACCTCTGTCCCTCATGCCATCATCGCCAGTTCCATCCACTCCTGTTCTCCCTACTCAATCTACTCTTGTTCCTGCTACCTCGTCCACACCGCCTCCACCCTGTCCATCGTCCAAATGTTACCCCTCGCCTTGTTTAGTTTCAGCTTTCTCTGTCCCAAATATCTCACCCAGTCCCAATGCCTCACCATCTTCTTCAGAATTGATGCCTAAAAGGAAGTCCACCTCTGAAGCTTGCTTGTTGAATATGCTGGAGCAGATGGAATGGACACGGGAGAAGACCCCACATCAGGACAGTGAGGATTTCAGATTCGCTTCTGTCGTCGTGGACATGTTGGCCAAAATTGACCCTCGGATGAAATCCGAGGTTAAGTTCAAGATATATCAAATGCTATATGAGGCTGAGCGAACCAACAAGTAACTGAAAGCATTCACTGAAGACTGAACTACAGAAAGATTATTTTCTTGAATATGGCCATTTTGCAAATAGAGATTGCACAGCATTACAATTgtgaatagttttatttatactttaaaacTATTGTAAAAGTATCTGTTAGTCATCTTTTATTAAACATGGAAAAAAACTGTTGAAACTGAACTGgagtatgattttatttttaataaagtttcaAAACTCATTTGTGTATTGCTGCTATGTGGAGACACGAAGTGAACACAGGTCAAAGAATATGATCAGTTTTTATGTGGTATTAGAGTTCAGTTTAATAGATTAGAAACTACACTGCATACCTTAATGAGTCCACAAACTACATGCATTATTAAAAGGTTTTACCTTAAATTAAGTACACCACAAGGATTAATAAGAGCCAGCAAAATGGAAATTGAATGTACTTATATGGTGACAACAGCTGTTTTAATTACATAGCAGGGTGTAGTTACAGCATCAGCACTTTTTATGTTTGGTAAGATTTTTATACTGCAGTAAAAACCTTAATCGgttttattatggtggcttgagaaagccaacatactgttatactacctAAACTTACTATTTTTCTGTCTTGTTCTTCCTCGGAGACTAATTTCTATATGCATCTTCTCTtacaaactggtc

Function

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:1903204 negative regulation of oxidative stress-induced neuron death biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023870 lncRNA downstream 129457 24570357 ~ 24571175 (-) True XLOC_012111
TCONS_00024904 lncRNA downstream 382061 24307366 ~ 24318571 (-) True XLOC_012107
TCONS_00023860 lncRNA downstream 382063 24307366 ~ 24318569 (-) False XLOC_012107
TCONS_00023861 lncRNA downstream 382064 24307366 ~ 24318568 (-) False XLOC_012107
TCONS_00024903 lncRNA downstream 382071 24307366 ~ 24318561 (-) False XLOC_012107
TCONS_00023899 lncRNA upstream 484833 25188611 ~ 25191072 (-) False XLOC_012123
TCONS_00023901 lncRNA upstream 484833 25188611 ~ 25197601 (-) False XLOC_012123
TCONS_00023900 lncRNA upstream 484833 25188611 ~ 25197601 (-) True XLOC_012123
TCONS_00024906 lncRNA upstream 540660 25244438 ~ 25246610 (-) True XLOC_012124
TCONS_00024907 lncRNA upstream 809146 25512924 ~ 25522355 (-) False XLOC_012130
TCONS_00023876 mRNA downstream 15945 24681280 ~ 24684687 (-) True XLOC_012115
TCONS_00023875 mRNA downstream 19667 24668528 ~ 24680965 (-) True XLOC_012114
TCONS_00023872 mRNA downstream 68651 24588834 ~ 24631981 (-) False XLOC_012112
TCONS_00023871 mRNA downstream 68651 24588834 ~ 24631981 (-) True XLOC_012112
TCONS_00023873 mRNA downstream 96707 24602633 ~ 24603925 (-) False XLOC_012113
TCONS_00023879 mRNA upstream 5356 24709134 ~ 24714837 (-) True XLOC_012116
TCONS_00023880 mRNA upstream 111408 24815186 ~ 24820801 (-) True XLOC_012117
TCONS_00023881 mRNA upstream 133904 24837682 ~ 24838927 (-) True XLOC_012118
TCONS_00023883 mRNA upstream 151606 24855384 ~ 24866964 (-) False XLOC_012119
TCONS_00023882 mRNA upstream 151606 24855384 ~ 24866964 (-) False XLOC_012119
TCONS_00023856 other downstream 1034154 23663211 ~ 23666478 (-) True XLOC_012099
TCONS_00023840 other downstream 1775295 22925209 ~ 22925337 (-) True XLOC_012088
TCONS_00023839 other downstream 1914341 22786174 ~ 22786291 (-) True XLOC_012087
TCONS_00023820 other downstream 2689964 22002857 ~ 22010668 (-) False XLOC_012077
TCONS_00023811 other downstream 2841468 21833724 ~ 21859164 (-) False XLOC_012072
TCONS_00023885 other upstream 159933 24863711 ~ 24866653 (-) True XLOC_012119
TCONS_00023894 other upstream 213572 24917350 ~ 24937879 (-) False XLOC_012122
TCONS_00023896 other upstream 225365 24929143 ~ 24937535 (-) False XLOC_012122
TCONS_00023897 other upstream 228913 24932691 ~ 24937684 (-) False XLOC_012122
TCONS_00023912 other upstream 809146 25512924 ~ 25522751 (-) True XLOC_012130

Expression Profile

//