RNA id: TCONS_00023885


Basic Information

Item Value
RNA id TCONS_00023885
length 535
RNA type processed_transcript
GC content 0.48
exon number 4
gene id XLOC_012119
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 24855384 ~ 24866964 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCATGATGAGAGTTGCTCCTGGTCCTTTTGCCTCTGTTCGGGTTAATCGACCCGTCTTGCACTGTGCCGCGTCCGCCCTGATCAGATCCGTGAGTGTGTCTGCCGCTGCCTCTCAGGCTTTACCAGAGAGGGTGAAGATTGTGGAGGTTGGACCCAGAGATGGACTTCAGAATGAGAAGACCATTGTTCCCACGGAGGTGAAGATCCGGCTCATTGATATGCTCTCGGAGGCAGGACTTCCTGTCATTGAGGCCACTAGTTTTGTTTCACCTAAATGGGTGCCTCAGATGGCTGATCAGGAGGAAGTGATGCGTGGCCTCCACAAGAAACCTGGAGTGAATTACCCTGTTCTGACCCCTAACCTAAAGGGATTTCAGGCTGCTGTGAGTGAAATACAACACAAACTGTTATTTGCTCAGATACCTAAAAAGCTCATATGTGTGGAGATTTAAATATCCTCTTGTTAAGGTGTAAGGTATGacatactgtttctgggtccaacccgctactcatttgaattgagaaaatatttgt

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0046951 ketone body biosynthetic process biological_process
GO:0006552 leucine catabolic process biological_process
GO:0016829 lyase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004419 hydroxymethylglutaryl-CoA lyase activity molecular_function

KEGG:

id description
ko00650 Butanoate metabolism
ko00072 Synthesis and degradation of ketone bodies
ko00280 Valine, leucine and isoleucine degradation
ko00281 Geraniol degradation
ko04146 Peroxisome

ZFIN:

id description
ZDB-GENE-040426-958 Predicted to enable hydroxymethylglutaryl-CoA lyase activity. Predicted to be involved in ketone body biosynthetic process; leucine catabolic process; and lipid metabolic process. Predicted to be located in peroxisome. Is expressed in liver. Human ortholog(s) of this gene implicated in amino acid metabolic disorder. Orthologous to human HMGCL (3-hydroxy-3-methylglutaryl-CoA lyase).

Ensembl:

ensembl_id ENSDART00000136034

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024905 lncRNA downstream 145784 24700632 ~ 24717927 (-) False XLOC_012116
TCONS_00023878 lncRNA downstream 159933 24700632 ~ 24703778 (-) False XLOC_012116
TCONS_00023870 lncRNA downstream 292536 24570357 ~ 24571175 (-) True XLOC_012111
TCONS_00024904 lncRNA downstream 545140 24307366 ~ 24318571 (-) True XLOC_012107
TCONS_00023860 lncRNA downstream 545142 24307366 ~ 24318569 (-) False XLOC_012107
TCONS_00023899 lncRNA upstream 321958 25188611 ~ 25191072 (-) False XLOC_012123
TCONS_00023901 lncRNA upstream 321958 25188611 ~ 25197601 (-) False XLOC_012123
TCONS_00023900 lncRNA upstream 321958 25188611 ~ 25197601 (-) True XLOC_012123
TCONS_00024906 lncRNA upstream 377785 25244438 ~ 25246610 (-) True XLOC_012124
TCONS_00024907 lncRNA upstream 646271 25512924 ~ 25522355 (-) False XLOC_012130
TCONS_00023881 mRNA downstream 24784 24837682 ~ 24838927 (-) True XLOC_012118
TCONS_00023880 mRNA downstream 42910 24815186 ~ 24820801 (-) True XLOC_012117
TCONS_00023877 mRNA downstream 145786 24695594 ~ 24717925 (-) False XLOC_012116
TCONS_00023879 mRNA downstream 148874 24709134 ~ 24714837 (-) True XLOC_012116
TCONS_00023876 mRNA downstream 179024 24681280 ~ 24684687 (-) True XLOC_012115
TCONS_00023886 mRNA upstream 2718 24869371 ~ 24879003 (-) False XLOC_012120
TCONS_00023887 mRNA upstream 10739 24877392 ~ 24889837 (-) False XLOC_012120
TCONS_00023888 mRNA upstream 13669 24880322 ~ 24890928 (-) False XLOC_012120
TCONS_00023889 mRNA upstream 13672 24880325 ~ 24884966 (-) False XLOC_012120
TCONS_00023890 mRNA upstream 13678 24880331 ~ 24890843 (-) False XLOC_012120
TCONS_00023856 other downstream 1197233 23663211 ~ 23666478 (-) True XLOC_012099
TCONS_00023840 other downstream 1938374 22925209 ~ 22925337 (-) True XLOC_012088
TCONS_00023839 other downstream 2077420 22786174 ~ 22786291 (-) True XLOC_012087
TCONS_00023820 other downstream 2853043 22002857 ~ 22010668 (-) False XLOC_012077
TCONS_00023811 other downstream 3004547 21833724 ~ 21859164 (-) False XLOC_012072
TCONS_00023894 other upstream 50697 24917350 ~ 24937879 (-) False XLOC_012122
TCONS_00023896 other upstream 62490 24929143 ~ 24937535 (-) False XLOC_012122
TCONS_00023897 other upstream 66038 24932691 ~ 24937684 (-) False XLOC_012122
TCONS_00023912 other upstream 646271 25512924 ~ 25522751 (-) True XLOC_012130
TCONS_00023914 other upstream 718834 25585487 ~ 25586858 (-) True XLOC_012132

Expression Profile

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