RNA id: TCONS_00024923


Basic Information

Item Value
RNA id TCONS_00024923
length 2016
lncRNA type read_through
GC content 0.41
exon number 5
gene id XLOC_012189
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 30306215 ~ 30369525 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCACCGTTAGTTAATTGTGAAATCACTCAGATATTCCAAGGGAATTCGGCAAGGATCGCACTGTTCATGTACATATCTCCGAGATGCGCGATTGAGCCGCGTCTCCGCTGGTCACTGGCGGTCAGACTCCGTAAAAATGCCGCTGGCCGCATGCCATAATTTCTTACTGCGATCTGGTCACCCCTTCCTCTCTCTGTGATGGTGTCGACCCTTCATTCTCTCCCTCAAGTCCCTGTGGAGATGGTATCGCCCAACGTCACCGCTTGTTGAGCGGGATTTAGGACATAAGTGTTGAAAACAGTCAGGTGTTTAAAACTTCAGGCACCGGAACCTAATGAGAAAACAAGAGCTGGAGCCTGGCCAGAAAAGGAGAACTTGCTGGTGATTCATTGGACTAGACCAGACCAGGTTCTCCACTGCAATGGGAGATAATaaggccatttatatggatgtcAGTGGACAGGAAGCATGACCATATCTGGACTCTGAAGGACAGACCATCAGGTCCTCATAAGGAAATGCTAAACCATAGTGCTGAATGCTGTACTGTGGagcactatccctttaaatgtctgCCAACAGGACAGTGTCAGAACGTTGTGAGTGGCCATGAGATGTCAGCGTGACAGGCAGCATCCTGAAGCCGCCAGCGCTTGTGCATGGCCACTGGGCCGACACATATGGCCATTCCTGCACCCCGAGCCGGCCTCCCCGAGGAACACTTTGGAAGAGGGTGAGATTGTGGAGGAAGGTCGTGATAAGTTCGGATGCCGTTGTGCCGGGAGGGAGGAGGTTTGAGTCTGGGCTGGAAATGAACACTGAGGTAGCAGCGGTCAAGTTCAAATCGCTGAGGCCTGTGTTGATTAGGAGCTGGTGTGGGGAAATCCTTTCTCACAGCGAGCAGTTGTTAATTGGTTTAAGGCAGAGTTTACAGGCAAAACCATTTCAATTTGATGACTTGGTTCTTTTCGTCTTTTCGTAAGTGTAAAATTGGTTATTTCATTCTTTTGATCTTCCTCTGTCCATGAGGCAAACATTTATTACACCTTCATTACTTGTCAAACTTTTCTAGTTTTTTCATACAACTAAGGCTTTGTTCGGTCAAAGTAATGTAAAGAAAATTCTATCTGCTGTCTGCAATCCTGTTTTTCAACTTTTTATCTGAAATGAATTGGGTTTTAAAAGTcagtttcagttcagttctgaATGGTGcacaatactgacatttatttgatcaaaatactataaaaaacactgtgaaacaccattacaatttaaaaccatttttaaattcagttttttttaatattctggaTTTTCTAAATCTTTACTTTGATATTCAATGTAACAGGCTCCTCCAATGATCTAATGTGCTGACTTTTAACATTTGTATGTTACTATACAAAATAATATGTTtgtgaaaatgtttaatttttgccAAGTTTCTTTGATATACAGAAAGTTTGGTAGCAATAAACATCACAGTTAATGTTACGTCATGGTTAATGTCTACATTTACTAATACTTTATTAAAAGTTGTATATAAAAGTTGGAAAAGTTAATACTTataatagtattaaatatatttaagctGATATGAGctaacaacaaacacaaaacacaacccaggctcattctgaaaacgtacatctacatacatttctggacactGCAAAATACATCTCAgggggtacattttttttttttgttgcaatttttgtttttgcgaattcaCGCGAGggtgctgtgtacgctttttgaaatctcaaTTTTTTTTGCACAAGTGCCATGCTGTTCTCGCATagacccaccagaggccgctgttgactgactgtttgactgactaactgaccaatCGCATGACCACCCTCCTTATttgctaaacccaaccaattttattgattgatccacccacccacttccctaaacccaaccaacaattttcaaaagcaatccagaaaaagaaaagcccttgtctgatttttaccacgtttttacattttaccacattcttac

Function

GO:

id name namespace
GO:0033596 TSC1-TSC2 complex cellular_component
GO:0031462 Cul2-RING ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024922 lncRNA downstream 25502 30278131 ~ 30280713 (-) True XLOC_012188
TCONS_00024920 lncRNA downstream 80691 30151767 ~ 30225524 (-) False XLOC_012187
TCONS_00024921 lncRNA downstream 80691 30203624 ~ 30225524 (-) True XLOC_012187
TCONS_00024919 lncRNA downstream 223502 30077331 ~ 30082713 (-) True XLOC_012186
TCONS_00024009 lncRNA downstream 252058 29976009 ~ 30054157 (-) True XLOC_012185
TCONS_00024928 lncRNA upstream 29424 30398949 ~ 30405943 (-) False XLOC_012190
TCONS_00024929 lncRNA upstream 33777 30403302 ~ 30405943 (-) False XLOC_012190
TCONS_00024930 lncRNA upstream 33777 30403302 ~ 30409759 (-) True XLOC_012190
TCONS_00024014 lncRNA upstream 102886 30472411 ~ 30473361 (-) True XLOC_012191
TCONS_00024931 lncRNA upstream 204047 30573572 ~ 30592749 (-) False XLOC_012193
TCONS_00024010 mRNA downstream 100913 30140099 ~ 30205302 (-) False XLOC_012187
TCONS_00024007 mRNA downstream 404028 29797876 ~ 29902187 (-) False XLOC_012184
TCONS_00024008 mRNA downstream 428879 29798216 ~ 29877336 (-) True XLOC_012184
TCONS_00024003 mRNA downstream 534576 29376854 ~ 29771639 (-) False XLOC_012181
TCONS_00024013 mRNA upstream 100219 30469744 ~ 30473374 (-) False XLOC_012191
TCONS_00024015 mRNA upstream 103982 30473507 ~ 30521043 (-) True XLOC_012192
TCONS_00024016 mRNA upstream 235294 30604819 ~ 30652738 (-) False XLOC_012194
TCONS_00024017 mRNA upstream 235995 30605520 ~ 30635298 (-) False XLOC_012194
TCONS_00024019 mRNA upstream 291823 30661348 ~ 30666037 (-) True XLOC_012195
TCONS_00024011 other downstream 101686 30176436 ~ 30204529 (-) False XLOC_012187
TCONS_00024004 other downstream 668894 29637205 ~ 29637321 (-) True XLOC_012182
TCONS_00024000 other downstream 1033134 29272963 ~ 29273081 (-) True XLOC_012179
TCONS_00023997 other downstream 1081304 29216367 ~ 29224911 (-) True XLOC_012176
TCONS_00023990 other downstream 1494577 28809704 ~ 28811638 (-) True XLOC_012171
TCONS_00024018 other upstream 251895 30621420 ~ 30635295 (-) True XLOC_012194
TCONS_00024025 other upstream 531247 30900772 ~ 30901872 (-) False XLOC_012199
TCONS_00024027 other upstream 536189 30905714 ~ 30911622 (-) False XLOC_012199
TCONS_00024055 other upstream 982670 31352195 ~ 31360599 (-) False XLOC_012207
TCONS_00024057 other upstream 1014909 31384434 ~ 31384548 (-) True XLOC_012208

Expression Profile

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