RNA id: TCONS_00024542


Basic Information

Item Value
RNA id TCONS_00024542
length 218
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id XLOC_012235
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 33564882 ~ 33571806 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCTCCCATTTGGTGCCTACAGCGGAGAACACACAGCTGAATAACAACGAAGATCCGTGATGGAGTGGTGACCCCGAGCCAGCTgtgaagacaaacaaacaaactctcaGCAGATGCTCGATATCCCACCGCCCACCTCCAAATAGCCCAGCGgcgACTCCAGCACTGGACTGTTTCTGCAGCCTCTTTGTTAACAACCTTGATCCTTAACTATCAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024939 lncRNA downstream 104833 33455995 ~ 33460893 (-) True XLOC_012233
TCONS_00024110 lncRNA downstream 109284 33418262 ~ 33456442 (-) False XLOC_012233
TCONS_00024107 lncRNA downstream 150892 33409586 ~ 33414834 (-) False XLOC_012232
TCONS_00024098 lncRNA downstream 334012 33206780 ~ 33231714 (-) False XLOC_012230
TCONS_00024942 lncRNA upstream 1091079 34661398 ~ 34691529 (-) False XLOC_012237
TCONS_00024543 lncRNA upstream 1116085 34686404 ~ 34691556 (-) True XLOC_012237
TCONS_00024943 lncRNA upstream 1136460 34706779 ~ 34800320 (-) False XLOC_012238
TCONS_00024117 lncRNA upstream 1136460 34706779 ~ 34805758 (-) False XLOC_012238
TCONS_00024944 lncRNA upstream 1170837 34741156 ~ 34805738 (-) False XLOC_012238
TCONS_00024111 mRNA downstream 13363 33501766 ~ 33552363 (-) True XLOC_012234
TCONS_00024109 mRNA downstream 149706 33412220 ~ 33416020 (-) True XLOC_012232
TCONS_00024106 mRNA downstream 149986 33409565 ~ 33415740 (-) False XLOC_012232
TCONS_00024105 mRNA downstream 150898 33409038 ~ 33414828 (-) False XLOC_012232
TCONS_00024112 mRNA upstream 117901 33688220 ~ 33707589 (-) False XLOC_012236
TCONS_00024115 mRNA upstream 138363 33708682 ~ 33716688 (-) False XLOC_012236
TCONS_00024116 mRNA upstream 139372 33709691 ~ 33714636 (-) True XLOC_012236
TCONS_00024118 mRNA upstream 1239324 34809643 ~ 34963575 (-) False XLOC_012239
TCONS_00024119 mRNA upstream 1243978 34814297 ~ 34952562 (-) False XLOC_012239
TCONS_00024101 other downstream 326440 33238317 ~ 33239286 (-) True XLOC_012231
TCONS_00024095 other downstream 786284 32774917 ~ 32779442 (-) True XLOC_012226
TCONS_00024093 other downstream 812442 32750175 ~ 32753284 (-) False XLOC_012226
TCONS_00024092 other downstream 812821 32746392 ~ 32752905 (-) False XLOC_012226
TCONS_00024082 other downstream 1139622 32423434 ~ 32426104 (-) True XLOC_012221
TCONS_00024113 other upstream 121379 33691698 ~ 33705464 (-) False XLOC_012236
TCONS_00024114 other upstream 129060 33699379 ~ 33713177 (-) False XLOC_012236
TCONS_00024124 other upstream 1658269 35228588 ~ 35238312 (-) True XLOC_012241
TCONS_00024130 other upstream 2047667 35617986 ~ 35618104 (-) True XLOC_012246
TCONS_00024140 other upstream 3064753 36635072 ~ 36635189 (-) True XLOC_012252

Expression Profile

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