RNA id: TU17062


Basic Information

Item Value
RNA id TU17062
length 430
RNA type TUCP
GC content 0.50
exon number 2
gene id LOC110490510
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 15694810 ~ 15716774 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagatgcagtaaaAAGAGGAGGACCTGGCTAAACAGCACATCACGCAAATGGTAAAATGCTATTAACCCACTATACAAGGACTCTAGCGTCAATGTCTTTTTTTACAAGTGTTACATGCGGGCATATGTAAATCCGCAAAATCACAACGGATCTGGGGAAGTTAGCTTAAGGTCTTAGGAAACAGGTCTTAGGAAAACTGAGGTCTTAGCTAAACCTTAGATTTTAGGAAACAGGTCTTAGGAAACCCCCCCAAGAGCCCAGCATGCCGGAGCAGAGCAACGACTACCGTGTGGTGGTGTTTGGGGCCGGTGGCGTGGGCAAGAGCTCCCTGGTCCTCCGCTTCGTCAAGGGCACCTTCCGGGACACCTACATCCCCACTGTGGAGGACACCTACCGTCAGGTGATCAGCTGTGACAAGAGCGTGTGCA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17030 lncRNA upstream 56995 15637580 ~ 15638046 (+) True G14427
TU17020 lncRNA upstream 79204 15615571 ~ 15615837 (+) True G14418
TU17019 lncRNA upstream 79524 15615305 ~ 15615517 (+) True G14417
TU17017 lncRNA upstream 83407 15611073 ~ 15611634 (+) True G14415
TU16963 lncRNA upstream 163680 15531001 ~ 15531361 (+) True G14365
TU17497 lncRNA downstream 327700 16043382 ~ 16044075 (+) True G14858
TU17532 lncRNA downstream 372287 16087969 ~ 16097568 (+) True G14888
TU17543 lncRNA downstream 399131 16114813 ~ 16124751 (+) True G14897
TU17578 lncRNA downstream 469535 16185217 ~ 16185549 (+) True G14932
TU17655 lncRNA downstream 593185 16308867 ~ 16326251 (+) True G15008
XM_036951722.1 mRNA upstream 58817 15622518 ~ 15636224 (+) False LOC110490377
XM_021563779.2 mRNA upstream 58817 15622530 ~ 15636224 (+) False LOC110490377
XM_021563856.2 mRNA upstream 58817 15622530 ~ 15636224 (+) True LOC110490377
XM_021562998.2 mRNA upstream 88562 15595313 ~ 15606479 (+) True LOC110489937
XR_005053642.1 mRNA upstream 95826 15599090 ~ 15599215 (+) True LOC118966758
XM_021564171.2 mRNA downstream 195451 15911133 ~ 15919924 (+) False LOC110490675
XM_021564225.2 mRNA downstream 195451 15911133 ~ 15919924 (+) True LOC110490675
XM_021564309.2 mRNA downstream 204819 15920501 ~ 15922085 (+) True cart1
XM_021564067.2 mRNA downstream 206821 15922503 ~ 15975856 (+) True LOC110490588
XM_036952967.1 mRNA downstream 442250 16157932 ~ 16176681 (+) False LOC110491417
TU16507 other upstream 227053 15459904 ~ 15467988 (+) True sass6
TU16116 other upstream 733038 14961554 ~ 14962003 (+) True G13639
TU15897 other upstream 882417 14811771 ~ 14812624 (+) True G13434
TU15850 other upstream 994311 14700176 ~ 14700730 (+) True G13391
TU15839 other upstream 1015014 14679698 ~ 14680027 (+) True G13381
TU18087 other downstream 863404 16579086 ~ 16580882 (+) True LOC118941201
TU18393 other downstream 1200817 16916499 ~ 16920409 (+) True LOC110492606
TU18429 other downstream 1247375 16963057 ~ 16967790 (+) True LOC110492876
TU19135 other downstream 1938525 17654207 ~ 17665008 (+) False LOC110495874
TU19716 other downstream 2260282 17975964 ~ 17991176 (+) True ccdc124

Expression Profile