RNA id: XM_036952797.1


Basic Information

Item Value
RNA id XM_036952797.1
length 3036
RNA type mRNA
GC content 0.56
exon number 16
gene id LOC110491230
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16149712 ~ 16157809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTGTTATTAATTTTCGATGAATTTGTACTCTACCAAATACATTTCTAACGTTTTTACAAAAGAATAAGGCTGCAGGCAACTGAAAATACGCCTAAATTCGCTTGTCAGGGGTCCTACCACACCATCTTTGTATGTAACATGTTATAGGATGAATGCTGCAAAGTGCAATCAAGTACATGAAGGTGACTGAACATTTCTCTGATTGGACAAGGACACTTGCACAAACAGTGGAAAAGCATATGGTTGAATGATGGAGGTTGCCTATGTTTGTGAGTGGGAGAAGAGACCCAAGAGCAACCACTATCCTTCCATCCCACTGGTGTGTGCCTGGTCCTGCAGGAACCTCGTTGCCTTTACCACAGACCTAAAAAATGAGGAAGACGAGAAAGTCAGTCATATGGTCCACATCATTGACACAGAACACCCATGGGATGTGTACTCCATTAACTCTGGACATGGCGAGGTCATATCCTGTCTGGAGTGGGACCAATCAGGTTCCAGGTTGCTGTCTGCTGATGGAGATGGGCAGATCAAGTGCTGGGCGATGGCAGATCACCTGGTGAACAGCTGGGAGAGTTCACTAGGGAGTGCAGAGGACGGAGACCCCATCATAGCTCTGTCCTGGCTGCACAATGGAGTTAAGCTGGCTCTGCATGTGGAGATGTCGGGCTCCACCAATTTCGGTGAGAAATTTTCACGGGTCAAGTTCTCACCGTCACTCACGCTGTTTGGGGGAAAGCCCATGGAGGGCTGGCTGGCAGTGACAGTGAGCGGCCTGGTCACCGTGTCCCTGCTGAAGCCCAACGGTCAGCTGCTCACAGCCAGCGAGAGCCTGTGTCGCCTGAGGGGCCGCGTAGCCCTGGCCGACATCGCCTTCACCGGCGGGGGTAACATTGTGGTGGCGGCCACGGATGGCAGCAGCTCATCACCTGTGCAGTTCTACAAGGTGTGCGTGAGCGTGGTCAACGAGAAGTGTCGCATCGACACTGAGCTGCTGCCCTCGCTCTTCATGCGCTGCACCACGGACCCGGTCAGGAGAGACAAGTACCCGGCTGTCACACACCTCAAGTTCCTCACCAGGGAGAACTCGGAGCAGGTGCTGCTGTGTGCCTCCAGTCAGATGGGCAGCATCGTGGAGTGTTGGTCATTGCGGAAGGAAGGCCTCCCTGTCAATAACATATTCCAACATCGTTCACCAGTAGTGGGCGAGAAACAGCCGACGATCCTGAAATGGCGCATCCTCTCGGCCACCAATGATCTGGACCGCGTGTCGGCCGTGGCTCTGCCAAAGCTGCCAATCTCCATCTCCAACACTGACCTAAAGGTGGCGTCAGACACCAAGTTCTGCCCAGGCCTCGGCCTGGCCCTAGCCTTCCACGACGGCAGTATCCAGATCCTCCACCGGCTGTCCCTTCACACCATGGGCGTGTTCTATGGATCCTCCTCGGGCTCCTCCCAGCGGCCCGGTGATGAGCCGGCCATAAAGCGGCAGCGCCCCGGCGGCCCAACCGTCCACTTCAAGGCCCTGCAGTTCTCCTGGACCTCACTGGCCCTGGCCGGAGTGGACAACCACGGCAAGCTGCACATGATTCGCGTATCTCCATCCATGGGCCAGATGCTGGACATGAACACACTTCTGCGCCACCTGCTGTTCCTGCTGGAGTACTGCATGGTGACAGGCTACGACTGGTGGGACGTGCTGCTCCACGTGCAGCCTGGCATGGTCCATAACCTGGTGGAGAAGCTGCATGAGGAGTACATGAGACAGAACCAAGCCCTGCAGCAGGTGCTCTCGACACGTATCGTGGCGGTTAAGGCCTCCCTCTGTAAGCTGTCATCGGCCACAGCTGCGCGAGCTTGCGACTTCCACGCCAAGCTCCTCCTCATCGCCATTAGCTCCACCCTCAAGTCCTTGCTGAGACCCCACGTCCTCAACACTCCAGACAAGAGCCCCGGGGACAGGCTGGCAGAGATATGTTCCAAAAACACTGACACTGATATCGATAAGGTGATGATCAACCTGAAGACGGAGGAATTTGTGCTGGACGGCCCCCCACTCCAGTCTCTGCAGCAGCTCATCCAATGGGTGGGAGACTTTGTGCTGTACCTGATGGCCAACCTACCCAAtcagGGCTCCGTCGTGCGTCCCGGCTTTGGGTTTCTGCGCGACGGTTGGTCCCTGGGTATGCTGCGGGAGATGATGGTGATGATCCGCATCTGGGGCCTTCTGAAGCCTGGCTGCTTGCCCATCTACACGGCCACCTCGGACAACCAGGACAGCATGTCGCTGCTCTTCCGCCTGCTCACCAAGCTCTGGCTCTGCTCTCGGGACGAGGGCCACCCCCAGGAGCCAGATGAGCCGCTGATAGACGAATGCTGCCTGCTGCCCAGCCAGCTGCTGGTGCCCAGCATGGACTGGCTGCCTGTCAACGACGGGATCATCTGCAAGCTGCAGGGCAAGCACCCGCTGCGGCTTCAGTTTGGCAAGCCCTACAGCCTGCCGGGTCTCAACTCCACACCCCAGGTGGAGGTCTTCTCCAGGAGCCCGGGGGTCCAGAGGATGGATCATCTACGTTGTCTCTACATGGGAGTCTGCCCCACAGAGGACAGCAAAGCCTGTACCAGgTGTGGCTGTGTGACTATGCTCCGCTCCCCTAACAAGACCAACGCCATGAAGCAGTGGGAGCAGCGCTGGATCAAGAACTGCCTTTGTGGAGGCCTCTGGAGAAGGATCCCCTCCACACTGTCCTGAGATCTGTCCTGAGACCATTATCACCGCAAACCCTGACCTCAGGTCAGCCTTTGGACACTAGCCTGCATGACACTGCTGCCTCTTAGCAGATCTCTTTGGGGGACAGATGAAGTACTGGATATCCATACGGTTGTATTTCAAAGATCGCTGTTTGGAGAGGCGGTGATCATGCCGTCATTGGGGTTAAATGTGCCAGAGATACCTGTAAATAGGAACCACGTGTTTTTTATGTCTCTTTATATTCAAACCTGTGTCAAGAAAATAAACCTTATTTGGTGACCTT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K15159 MED16; mediator of RNA polymerase II transcription subunit 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17771 lncRNA downstream 105642 16043424 ~ 16044070 (-) True G15117
TU17714 lncRNA downstream 195137 15954347 ~ 15954575 (-) True G15067
TU17408 lncRNA downstream 248026 15901457 ~ 15901686 (-) True G14772
TU17398 lncRNA downstream 251542 15897580 ~ 15898170 (-) False G14763
TU17855 lncRNA upstream 20468 16178277 ~ 16180984 (-) False G15194
TU17860 lncRNA upstream 20468 16178277 ~ 16181159 (-) True G15194
TU17862 lncRNA upstream 23891 16181700 ~ 16181980 (-) False LOC110531395
TU17864 lncRNA upstream 26121 16183930 ~ 16184262 (-) False LOC110531395
TU17866 lncRNA upstream 27236 16185045 ~ 16185275 (-) True G15199
XM_036952630.1 mRNA downstream 13419 16114792 ~ 16136293 (-) True LOC110531327
XM_036952414.1 mRNA downstream 73912 15995436 ~ 16075800 (-) True LOC110490953
XM_036952292.1 mRNA downstream 73914 15995436 ~ 16075798 (-) False LOC110490953
XM_036952353.1 mRNA downstream 73914 15995436 ~ 16075798 (-) False LOC110490953
XM_036952508.1 mRNA downstream 73916 15995436 ~ 16075796 (-) False LOC110490953
XM_021614590.2 mRNA upstream 23705 16181514 ~ 16295527 (-) False LOC110531395
XR_005037508.1 mRNA upstream 161946 16319755 ~ 16335818 (-) True LOC118941184
XM_036953031.1 mRNA upstream 181438 16339247 ~ 16415642 (-) True LOC110531543
XM_021565009.2 mRNA upstream 268303 16426112 ~ 16432609 (-) True LOC110491485
LOC118966506 mRNA upstream 439000 16596809 ~ 16601637 (-) True LOC118966506
TU16758 other downstream 808831 15334079 ~ 15340881 (-) True LOC110488740
TU16702 other downstream 966170 15182541 ~ 15183542 (-) True LOC110488330
TU16701 other downstream 967649 15178546 ~ 15182063 (-) False LOC110488330
TU16695 other downstream 975682 15166181 ~ 15174030 (-) False G14120
TU16543 other downstream 1190444 14956025 ~ 14959268 (-) True LOC110487385
TU17863 other upstream 31195 16189004 ~ 16216296 (-) True LOC110531395
TU18158 other upstream 373238 16531047 ~ 16531476 (-) True G15470
TU18315 other upstream 702840 16860649 ~ 16871928 (-) True LOC110492105
TU18890 other upstream 973611 17131420 ~ 17136357 (-) False G16100
TU18891 other upstream 973912 17131721 ~ 17136357 (-) False G16100

Expression Profile