RNA id: XM_021565009.2



Basic Information


Item Value
RNA id XM_021565009.2
length 1056
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC110491485
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16426112 ~ 16432609 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTAGGGGAAGTCCGTTACACACTCTGCAAGGAACCTCCTGCCTCTTACACAGATACCGCTTGCAGGACAGGACGCACTCCGGATCACCTAATCACCTGCCCTAAAAAAGGATTTTGTtcttcttttttattttaccatcaccacctccacctTTGTGTCCACCATGACCAGGTCCAAAATCATCTGCAATATTATGATTGCCTGCCTGTTCCTGTGGTCGGTCAGCTCCCTCATCATCATCGTGGTGTGGGCCACCTCTCCGGACATGAAGGGCGCCAGCCAGTGCAGGACTGATCTGCAGAACCTGACAGAGAAGCACGAGGAGGCCAGGGTGCTGTCCTCCAAGATCAAGCAGGCCCtggaggagatggtggaggagggCCGCACCAACCAGACCCGGCAGCTCATGAACATGGAGCGGTTCCTGAAGCGCCTGGGCAAGACCAACGTGTCCCTGGCTGACTGTCATCAGGAAAGCGTTATTTTGGGTGTAAACATTACTGTCCTGGAAAAAGAGATTGAGATGCATAAAGAAATCGAGGCAAATCTCACTTCAGAAATCACGCTACACCAAGAGCACATCAAATTCCTTCAGGATAACTTGACACAGACATCTCATAAGTGGGAGTCCTGCGAGGCTTTGTACTCAGCTGTTGAGAGTCAGCGGATAGCAGCTGAGAGCCAGGCCAAGGACTGCGAGTCCAACAAGCAGTATTTACAGAAGCAGCTGCAGATGTGCAAAGTGAACCATCACAGCGAGCCTGTGAATGGCGGAGTTGCTGCATCCCAGAGTAGCATTCTTGCCCTGTCTGTTGTCCTCTTCGTCAGTCTGCATTTGATAACATGAACATGATGCTGAGCCTGTGTGGTCATTGAAGACAATTACGACAAGTTCTCCAGGACAATAAGATGGACCTGGACTTGGTATTATATGGTtattagtgctgagcgattaaccatcataaaaaaaagtaaaaagttattaacctctctgggataggcgggacgcttgcgtcccacttggccaatagccagggaaaatgtagagcgccaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18034 lncRNA downstream 21695 16404100 ~ 16404417 (-) True G15364
TU18033 lncRNA downstream 22289 16403561 ~ 16403823 (-) True G15363
TU18018 lncRNA downstream 37489 16388327 ~ 16388623 (-) True G15348
TU17995 lncRNA downstream 52081 16373646 ~ 16374031 (-) True G15325
TU17866 lncRNA downstream 240837 16185045 ~ 16185275 (-) True G15199
TU18138 lncRNA upstream 17908 16450517 ~ 16450732 (-) True G15451
TU18139 lncRNA upstream 19996 16452605 ~ 16452804 (-) True G15452
TU18145 lncRNA upstream 26253 16458862 ~ 16465253 (-) True G15457
TU18141 lncRNA upstream 52877 16485486 ~ 16486747 (-) True G15454
TU18171 lncRNA upstream 147201 16579810 ~ 16592967 (-) True G15481
XM_036953031.1 mRNA downstream 10470 16339247 ~ 16415642 (-) True LOC110531543
XR_005037508.1 mRNA downstream 90294 16319755 ~ 16335818 (-) True LOC118941184
XM_021614590.2 mRNA downstream 130585 16181514 ~ 16295527 (-) False LOC110531395
XM_021564688.2 mRNA downstream 268303 16149712 ~ 16157809 (-) False LOC110491230
XM_036952797.1 mRNA downstream 268303 16149712 ~ 16157809 (-) True LOC110491230
LOC118966506 mRNA upstream 164200 16596809 ~ 16601637 (-) True LOC118966506
XM_036953669.1 mRNA upstream 172764 16605373 ~ 16608826 (-) False LOC118941208
XM_036953607.1 mRNA upstream 172764 16605373 ~ 16608827 (-) True LOC118941208
XM_036953979.1 mRNA upstream 290622 16723231 ~ 16726607 (-) False LOC118941412
XM_036954047.1 mRNA upstream 290622 16723231 ~ 16726607 (-) True LOC118941412
TU17863 other downstream 209816 16189004 ~ 16216296 (-) True LOC110531395
TU16758 other downstream 1085231 15334079 ~ 15340881 (-) True LOC110488740
TU16702 other downstream 1242570 15182541 ~ 15183542 (-) True LOC110488330
TU16701 other downstream 1244049 15178546 ~ 15182063 (-) False LOC110488330
TU16695 other downstream 1252082 15166181 ~ 15174030 (-) False G14120
TU18158 other upstream 98438 16531047 ~ 16531476 (-) True G15470
TU18315 other upstream 428040 16860649 ~ 16871928 (-) True LOC110492105
TU18890 other upstream 698811 17131420 ~ 17136357 (-) False G16100
TU18891 other upstream 699112 17131721 ~ 17136357 (-) False G16100
TU18888 other upstream 699194 17131803 ~ 17136357 (-) False G16100

Expression Profile