RNA id: XM_021614590.2


Basic Information

Item Value
RNA id XM_021614590.2
length 4227
RNA type mRNA
GC content 0.58
exon number 9
gene id LOC110531395
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16181514 ~ 16295527 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAACTCCATCTGTAGATCACTGGTCATATAATCGTCAACAAAAGGAATAAAGGACCATACAGCAAAGAAAAAGGAAGAAGGAAATAAGGCAAGCGATGCTATCTTCTGACAATACCTCATTCTGTTTGAGAGCGCAGCAGGATGAATTTAATCTTCTCAAGATTATTGGCATACTTTTACTTCGGATTCCAAGTGATTCTACAGTTCTACATCGACCCTTGTCACCTCCATCCCCAGCCGTGTCACATTCTGGCGCAGATAGGAAACACCGTGCGCCTTGGTGCCCTTCTGCCCACCCGCCAGACGGCCAGGGTGCAGGCTGCCCTGAACCGCGCCCTCGCCGGTCTCGCTCAAACTGGGGACAACTTTCTACCTTTCAACCTGAGCCTGGAAGTGGTTCCCCAAGAGCCAGCAAAAGGAGACCCCGAGTCCCTTTTCAGGTGTGTTTGTCAGGCTATCGTTGTTCAGGGGGTCTCCGCTGTGCTCGCCTTCCCCCAGACCCAGGAAGAGATCGTACAAGTGGAATTTATGGCTTCATTTTTGGAAATACCTTTTATAAGCATCATTGAATACGGAGAGCCTCTGAAAACACAGaacCGCTTCCACCTACAGATGGTTACTCGGATCCCCCCGTCGGGCCTGTCGGAGCTGCTGCTGGCCGTCCTCCAGCGGAGCGGCTGGCAGGAGCGCATGGCCGTGCTGTGCCAGGGTTGGGAGGAGGATGGCCTGCTGGAACTACTGGACCTCCAGAGCCACCTGGGCTGTGGTGCAAACCGTTGGCAACTCCGCGCCCTCCTCAACCTCACCCGTGCTGGCCCAGCAGAATCCCAAATCCAGGACTTCCTTTCAGAACACTTCCGGGGGCAGGGCCCAAGTCAGATCCCACCACCGGCCGCGGTGCTGCTGTTTGGGGGCGACCCAGAGTGTGCCGCGGCGGTGCTGCGGAGCGCCCAGGACTTGGGGCTGACGCTGCCCACGGTGCACTGGATGCTGGGCTACCCACTGAGCCCCGACGCCCTGCACTCCATCGGCCTGCCCCTGGGTCTGCTGGCCTACGGTGAAGTGGAGCGCAAGCCGCTGGACTTCTACATCCGCGACGCGCTGCAGCTGGTGGGCCGGGCAGTGTCAGCGGCCACAGTGGTGCGCCCAGACCTGGCGCTCATCCAGAACATGGTCAACTGCTACGACAAACCCAACAAACACGAGGTGCCCTCCTCCGGACAGTACCTTGCCAGGTTCCTGTCCAACACGTCGTTCTCAGGGCTGACGGGGCCGGTGTCGGTGCAGAGGAACCTATCCCGAGTTCTCACCTCTCAGCGATTCCACATCTGGAGCCTGCAGCGGGACGCGGTGGGCCAGCCCACCTGGGtgacagtgggcagctgggagggggGCCATCTGGAGGTGGAGGACCAGGGCCTGTGGCAAGGGCACAATGGCAAGGGCCATGGCCGGGGGGAGGGCCAGGGGAGGCGGGGCGGGGGCCGGTGGCGAGCCGGCAGTCCTGTGGCAGGCAGCCGGGTGCGGGTAGTCACCCTAGTGGAGCACCCCTTCGTATTCACGCGGGAGGTGGATGAGGACGGGAACTGTCCGGCAGGACAGTATTGCCTGGACGCGGGGACAAACAGCTCGGACATGCTGGAGCGCTACTTCAGTGAGCGTGCCACGGGAAACTCTACCTTCCTGCCCACGGACTACGGCAAGTGTTGTTACGGATACTGCATAGACCTGCTGGAGAAAATGTCAGAGGACATGCGCTTCGAGTACGACCTGTACATCGTGGGCGACGGGAAGTACGGTGCATCGAAAAGCGGCCGCTGGACTGGGCTGGTGGGTGACCTGCTCAATGGCGTGGCCGACATGGCCGTCACCTCATTCAGCATTAACTCAGTACGCAGCCGTGTCATCGACTTCACCTCGCCCTTCTTCTCCACCTCGCTGGGCATCCTGGTGCGTAGCAAGGACACGGCGGCGCCCATCGGCGCCTTCATGTGGCCCCTGCACTGGTCTATGTGGGTGGGCATCTTTGTGGCGCTGCATATCACCGCCCTCTTCCTCACCCTCTATGAGTGGAAGAGCCCGTTTGGCATGACGCCACACGGACGCAACCGTCTGCGCGTCTTCTCCTACTCGTCTGCGCTCAACCTCTGCTACGCCATCTTGTTTGGCCGCACGGTCTCCAGCAAGACGCCCAAGTGCTGGACGGGTCGGTTTCTGATGAACCTGTGGGCCATCTTCTGCCTGTTGGTGCTGTCCAGCTACACAGCCAACCTGGCCGCCGTCATGGTCGGCGAGAAGACCTTCGAGGAGCTATCGGGGATCCACGACGCCAAGCTCCATCACCCATCCCATGGTTTCAGGTTTGGCACGGTGAGGGAGAGCAGCGCTGAGGAGTACATGAAGAAGAGTTTCCCAGAGATGCACGAGTACATGAGGCGCTACAATGAGCCCACCACACCCGATGGAGTGTCCACCCTCAAGGTAGATCCCCCTCAGCTTGATGCCTTCATCATGGACAAGGCCCTGCTGGACTACGAGGTGTCCATCGACGCAGACTGCAAGCTGCTCACTGTGGGCAAGCCCTTCGCCATCGAAGGCTATGGAATAGGCCTCCCACAGAACTCCCCTCTAACCAACAACGTGTCAGAGTTCATCAGTCGCTACAAGTCAGACGGCTACATGGACATGCTGCACGACAAGTGGTACAAGGTGGTGCCTTGTGGGAAGAGGGTGTTCGCCGTCACCGAGACTCTCCAGATGGGCATCCGTCACTTCTCAGGGCTGTTTGTGctgctgtgtgtgggtgtggccACGTCACTGCTCACCCTGGCTGGGGAGCACGCCTTCTATCACATGGTGCTGCCACACATCCGACGACGACAGAAGTACAAGTACTGGCTCCACACTAGccagAAAATCCACCGAGCCCTGAACCAGACCTATGAGGATGTGAAGAAGAAGCAGGGAGCCAACACAGAAAAAAGCTGCAACAACCAGAAGAACCAGCACCCCCAGCCTCCCCCAGACCCCCCTTCCCCCGGCGCCTCGGCCAAGTGGAACGAGAGCAGCACGGACTCCACTGCTGCAGCCGCTAAAGACAAGCGAGTCCACTTTAACCTGGAGACCCTCAACAGCCGCCGCCTTCTAGCCCGGGCCGTGGCCGAGTctgaaggggggaggggggggtcggCTGGATGTGACACTAACCCTAGGACCAACCCGGCCACACGGGTCTGTGCAAATGGGGGCTTCGGGACTTCCTTTGCCAGTCTGGTGcaatccctcccctcctcttcttcctcctcaggCGTTCCTTTGAGGCCGGGAGAGCTGCAGGAGCTGCAGGAGAGGATCGACCTGATCCGGGATCAGCTGAGGACGGCTCTGGCCAGGAGGGCTGAGCTGCAGACTTCCCTGGCCAAGGAAAAAGCTGCCTGCTCCGCCCCCATAGTGACAGGAATGACCTCCGTGGTTGTAGCTACTGCAGCCCTCCCCTCCTCCCGCTGTGCCACCACCATGACAGACCCTGTCCTCAAGTCCCTGCCCACAGTCCACACCATCCCTCCCATACACACCAATGAGAAGAGCTGATGCCCCCTGGTGTTTGGAAAGCCAATGGTGTATTAGGGTTTATTGAAAGAAGTTGGATTACCTTGGATTGGATTTATCCAATTGTGAGCCCGATGCCATAGTATGGCAGCTCTTTCCCTGGACACTCTTTTGTTATTGGGTGAGATGAAAGAGCTTTTCAGGGCACTGGGAATCCCTTGTGATCTACATGTGCCCAATTGGTCCTCCCATGATTGGTAAAatgtgtgtttgggtttgggCTACCTCAGGCCTACTTGGATCTACCATGCCAATGGAGTGGGGCTAGAAGTACCAGCATGCCCCCATGACCGAGCCCCGCTGGCACTGCACCCATTTTGGGAACTTAACCACTGACTTTCCAGTGGTCTCTCTTCTGCCACAGGAGCCAAAATGGCCACCCACAACCTTCTGTTTCCAGTGTCTTGTTGATTTTAGTGGTGGGGCGATAACTGAATTTTATCAACGATGCAATGGCAACCTGAAACAATCAGTAATACGTGGAGTTCAGACTGTATTCAAATCAGTAGAGGTGGTGCTTTTATGGTGTTTCTGTTTTCTTCCTTTGAGTTCCGAGTCGATATCGTTCAAGAATAAAGTCTGATGGAAGTGTTGGTTGTGATGGTTGAAATGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17860 lncRNA downstream 355 16178277 ~ 16181159 (-) True G15194
TU17855 lncRNA downstream 530 16178277 ~ 16180984 (-) False G15194
TU17771 lncRNA downstream 137444 16043424 ~ 16044070 (-) True G15117
TU17714 lncRNA downstream 226939 15954347 ~ 15954575 (-) True G15067
TU17408 lncRNA downstream 279828 15901457 ~ 15901686 (-) True G14772
TU17995 lncRNA upstream 78119 16373646 ~ 16374031 (-) True G15325
TU18018 lncRNA upstream 92800 16388327 ~ 16388623 (-) True G15348
TU18033 lncRNA upstream 108034 16403561 ~ 16403823 (-) True G15363
TU18034 lncRNA upstream 108573 16404100 ~ 16404417 (-) True G15364
TU18138 lncRNA upstream 154990 16450517 ~ 16450732 (-) True G15451
XM_021564688.2 mRNA downstream 23705 16149712 ~ 16157809 (-) False LOC110491230
XM_036952797.1 mRNA downstream 23705 16149712 ~ 16157809 (-) True LOC110491230
XM_021564609.2 mRNA downstream 23841 16149712 ~ 16157673 (-) False LOC110491230
XM_036952630.1 mRNA downstream 45221 16114792 ~ 16136293 (-) True LOC110531327
XM_036952414.1 mRNA downstream 105714 15995436 ~ 16075800 (-) True LOC110490953
XR_005037508.1 mRNA upstream 24228 16319755 ~ 16335818 (-) True LOC118941184
XM_036953031.1 mRNA upstream 43720 16339247 ~ 16415642 (-) True LOC110531543
XM_021565009.2 mRNA upstream 130585 16426112 ~ 16432609 (-) True LOC110491485
LOC118966506 mRNA upstream 301282 16596809 ~ 16601637 (-) True LOC118966506
XM_036953669.1 mRNA upstream 309846 16605373 ~ 16608826 (-) False LOC118941208
TU16758 other downstream 840633 15334079 ~ 15340881 (-) True LOC110488740
TU16702 other downstream 997972 15182541 ~ 15183542 (-) True LOC110488330
TU16701 other downstream 999451 15178546 ~ 15182063 (-) False LOC110488330
TU16695 other downstream 1007484 15166181 ~ 15174030 (-) False G14120
TU16543 other downstream 1222246 14956025 ~ 14959268 (-) True LOC110487385
TU18158 other upstream 235520 16531047 ~ 16531476 (-) True G15470
TU18315 other upstream 565122 16860649 ~ 16871928 (-) True LOC110492105
TU18890 other upstream 835893 17131420 ~ 17136357 (-) False G16100
TU18891 other upstream 836194 17131721 ~ 17136357 (-) False G16100
TU18888 other upstream 836276 17131803 ~ 17136357 (-) False G16100

Expression Profile