RNA id: XM_036953669.1


Basic Information

Item Value
RNA id XM_036953669.1
length 1350
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC118941208
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16605373 ~ 16608827 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCACTTTCGTTTCCACACAACAAACACGCCCACAAGTTTACTGAGAAACAGATACACAATACTATCAGGTCAAACTGATCCATAGGCTCAGCTGGTTGTGGATACAATCTCCAAGCAATCTTGCTAGCATGTCCTTCAACTTCGGGATGGTACCTGGAAGTTGTCCTAATTTTTCTGCACCAGTTTTGCATGGTGAGAAACCCTCATCAATAACTTTGGCAACAAACCTGTTGGGAGGGGACGGCAGACCCGACTCGAGTAAAGTCAGCAAGGGGAATGTGATAAATGCACCTGGGGTGTTTGCAGGCCTGCTAGGGGCAGAACAGTGGAAAAGTAAGATGGAGTCCCCATGGAGGGAGGTGGCATGGACTGAGGATCGCAGGGAGACCCTGATGGAGTCTATCAGTTCCTATAAGCCTGGTTTTGAGGCTTTGTCTGAGGCTCGGGTTCTGCTGCTGGGTCCTGTCGGAGCCGGCAAGTCCAGCTTCATCAGCTCTGTTCAGTCAGTCTTCACAGGAAGATTCACTAACCGGGCCATGGTTGGCTCTTCCTCTGCCAGCTTCACCAAAAAGCTCCAGTTGTTCAACATCCGTGGGCGGAGTCCAGAGCAGCCTACTGCGCTGGTCCTGTGTGATGTCATGGGTCTGGGAGATGGGGAGACCACTGGACTAACCCTCCATGACACTCTGGCTATCATCAAAGGCCATGCACCCGAGGGACACAAGTTCAGTCCTGAGCAGCCTGTGAGATCAGAGACTGTGGGGTATGTAAAGAAGCCGTCCCTTAAAGACAAGGTCCACTGTGTCGTCTTTGTGGTGGATGCTTCTAAAGTGTCCAGCTACACCAAAGGTCTGGGCACCACCTTCCAACAGCTCAGAGAACACATCAGTGACCTGGGTGTGCATCAAGTGGCACTGCTGACACACGTGGACCAGGTGTGTCAGGAAACTGCCCGTGACATCACCCAGGTGTACAACAGTCGGATCGTTCAGCAGACGaTGACCAACGCTGGGGCTCTGCTTGGCATGTCCACCTCCTACATCGTTCCGGTGAAGAACTACTCATCTGAGCTGGACGTCGATGAGAACACAGACATCCTTCTGCTCAGTGCTGTGGACCACATCCTGCAATACGTGGATCTGCATTTCCAGGACTGTGCAGCAACATACCCTAAACTGTCTCTTTAAAAAGACTGtgaaatgttatttaaaaatGCATTACATATGTTTATAATGTTTTTTGACTTGCTTGCACTATTGTTAActttttaatttgatttgatttaatttgtccTTTACATAAGTCTTGCTTTGACTAAGACAAATAAGTAAAAGCCATTTTGAACGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18171 lncRNA downstream 12406 16579810 ~ 16592967 (-) True G15481
TU18141 lncRNA downstream 118626 16485486 ~ 16486747 (-) True G15454
TU18145 lncRNA downstream 140120 16458862 ~ 16465253 (-) True G15457
TU18139 lncRNA downstream 152569 16452605 ~ 16452804 (-) True G15452
TU18138 lncRNA downstream 154641 16450517 ~ 16450732 (-) True G15451
TU18186 lncRNA upstream 65367 16674193 ~ 16682680 (-) True G15491
TU18206 lncRNA upstream 163779 16772605 ~ 16772823 (-) True G15510
TU18212 lncRNA upstream 167378 16776204 ~ 16776416 (-) True G15516
TU18217 lncRNA upstream 172182 16781008 ~ 16781244 (-) True G15521
TU18285 lncRNA upstream 183832 16792658 ~ 16792910 (-) True G15584
LOC118966506 mRNA downstream 3736 16596809 ~ 16601637 (-) True LOC118966506
XM_021565009.2 mRNA downstream 172764 16426112 ~ 16432609 (-) True LOC110491485
XM_036953031.1 mRNA downstream 189731 16339247 ~ 16415642 (-) True LOC110531543
XR_005037508.1 mRNA downstream 269555 16319755 ~ 16335818 (-) True LOC118941184
XM_021614590.2 mRNA downstream 309846 16181514 ~ 16295527 (-) False LOC110531395
XM_036953979.1 mRNA upstream 114405 16723231 ~ 16726607 (-) False LOC118941412
XM_036954047.1 mRNA upstream 114405 16723231 ~ 16726607 (-) True LOC118941412
XM_036954236.1 mRNA upstream 195804 16804630 ~ 16809819 (-) False LOC110492040
XM_021566050.2 mRNA upstream 195804 16804630 ~ 16814764 (-) True LOC110492040
XM_021566167.2 mRNA upstream 229309 16838135 ~ 16871991 (-) False LOC110492105
TU18158 other downstream 73897 16531047 ~ 16531476 (-) True G15470
TU17863 other downstream 389077 16189004 ~ 16216296 (-) True LOC110531395
TU16758 other downstream 1264492 15334079 ~ 15340881 (-) True LOC110488740
TU16702 other downstream 1421831 15182541 ~ 15183542 (-) True LOC110488330
TU16701 other downstream 1423310 15178546 ~ 15182063 (-) False LOC110488330
TU18315 other upstream 251823 16860649 ~ 16871928 (-) True LOC110492105
TU18890 other upstream 522594 17131420 ~ 17136357 (-) False G16100
TU18891 other upstream 522895 17131721 ~ 17136357 (-) False G16100
TU18888 other upstream 522977 17131803 ~ 17136357 (-) False G16100
TU18952 other upstream 646410 17255236 ~ 17257241 (-) True G16161

Expression Profile