RNA id: TU18285


Basic Information

Item Value
RNA id TU18285
length 253
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G15584
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16792658 ~ 16792910 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGACTTACTGTAGACAGATCTGCTCTGAGCTGAATTCACCGGCCCAGATGGATCGAATTTCACTTTTAATAAAAACTAATGATATTGGGTTTCCGTGGACATGATTTCTCAATCAATATGCCAAAGTACATTACACCAAATCCTACTGGATCAGCTGGGTACCTCAGAGACTTTAACTGACTCAGGCTCTCTTACAGTCATCCTGTGCACATGGTTGCGTGTGTACTTTTCGCAGACCCATATGTTAAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18217 lncRNA downstream 11414 16781008 ~ 16781244 (-) True G15521
TU18212 lncRNA downstream 16242 16776204 ~ 16776416 (-) True G15516
TU18206 lncRNA downstream 19835 16772605 ~ 16772823 (-) True G15510
TU18186 lncRNA downstream 109978 16674193 ~ 16682680 (-) True G15491
TU18171 lncRNA downstream 199691 16579810 ~ 16592967 (-) True G15481
TU18287 lncRNA upstream 2473 16795383 ~ 16795720 (-) True G15586
TU18289 lncRNA upstream 4124 16797034 ~ 16797369 (-) True G15588
TU18290 lncRNA upstream 5105 16798015 ~ 16798245 (-) True G15589
TU18299 lncRNA upstream 33149 16826059 ~ 16827593 (-) False G15594
TU18297 lncRNA upstream 33590 16826500 ~ 16827593 (-) True G15594
XM_036953979.1 mRNA downstream 66051 16723231 ~ 16726607 (-) False LOC118941412
XM_036954047.1 mRNA downstream 66051 16723231 ~ 16726607 (-) True LOC118941412
XM_036953607.1 mRNA downstream 183831 16605373 ~ 16608827 (-) True LOC118941208
XM_036953669.1 mRNA downstream 183832 16605373 ~ 16608826 (-) False LOC118941208
LOC118966506 mRNA downstream 191021 16596809 ~ 16601637 (-) True LOC118966506
XM_036954236.1 mRNA upstream 11720 16804630 ~ 16809819 (-) False LOC110492040
XM_021566050.2 mRNA upstream 11720 16804630 ~ 16814764 (-) True LOC110492040
XM_021566167.2 mRNA upstream 45225 16838135 ~ 16871991 (-) False LOC110492105
XM_021566250.2 mRNA upstream 45225 16838135 ~ 16871991 (-) False LOC110492105
XM_021566330.2 mRNA upstream 45225 16838135 ~ 16871992 (-) False LOC110492105
TU18158 other downstream 261182 16531047 ~ 16531476 (-) True G15470
TU17863 other downstream 576362 16189004 ~ 16216296 (-) True LOC110531395
TU16758 other downstream 1451777 15334079 ~ 15340881 (-) True LOC110488740
TU16702 other downstream 1609116 15182541 ~ 15183542 (-) True LOC110488330
TU16701 other downstream 1610595 15178546 ~ 15182063 (-) False LOC110488330
TU18315 other upstream 67739 16860649 ~ 16871928 (-) True LOC110492105
TU18890 other upstream 338510 17131420 ~ 17136357 (-) False G16100
TU18891 other upstream 338811 17131721 ~ 17136357 (-) False G16100
TU18888 other upstream 338893 17131803 ~ 17136357 (-) False G16100
TU18952 other upstream 462326 17255236 ~ 17257241 (-) True G16161

Expression Profile