RNA id: XM_036954047.1


Basic Information

Item Value
RNA id XM_036954047.1
length 1329
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC118941412
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16723231 ~ 16726607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGACACGCCCACAAGTTTACTGAGAAACAGATACACAATACTATCAGGTCAAACTGATCCATAGGCTCAGCTGGTTGTGGATACAATCTCCAAGCAATCTTGCTAGCATGTCCTTCAACTTCGGGATGGTACCTGGAAGTTGTCCTAATTTTTCTGCACCAGTTTTGCATGGTGAGAAACCCTCATCAATAACTTTGGCAACAAACCTGTTGGGAGGGGACGGCAGACCCGACTCGAGTAAAGTCAGCAAGGGGAATGTGATAAATGCACCTGGGGTGTTTGCAGGCCTGCTAGGGGCAGAACAGTGGAAAAGTAAGATGGAGTCCCCATGGAGGGAGGTGGCATGGACTGAGGATCGCAGGGAGACCCTGATGGAGTCTATCAGTTCCTATAAGCCTGGTTTTGAGGCTTTGTCTGAGGCTCGGGTTCTGCTGCTGGGTCCTGTCGGAGCCGGCAAGTCCAGCTTCATCAGCTCTGTTCAGTCAGTCTTCACAGGAAGATTCACTAACCGGGCCATGGTTGGCTCTTCCTCTGCCAGCTTCACCAAAAAGCTCCAGTTGTTCAACATCCGTGGGCGGAGTCCAGAGCAGCCTACTGCGCTGGTCCTGTGTGATGTCATGGGTCTGGGAGATGGGGAGACCACTGGACTAACCCTCCATGACACTCTGGCTATCATCAAAGGCCATGCACCCGAGGGACACAAGTTCAGTCCTGAGCAGCCTGTGAGATCAGAGACTGTGGGGTATGTAAAGAAGCCGTCCCTTAAAGACAAGGTCCACTGTGTCGTCTTTGTGGTGGATGCTTCTAAAGTGTCCAGCTACACCAAAGGTCTGGGCACCACCTTCCAACAGCTCCGAGAACACATCAGTGACCTGGGTGTGCATCAAGTGGCACTGCTGACACACGTGGACCAGGTGTGTCAGGAAACTGCCCGTGACATCACCCAGGTGTACAACAGTCGGATCGTTCAGCAGACGaTGACCAACGCTGGGGCTCTGCTTGGCATGTCCACCTCCTACATCGTTCCGGTGAAGAACTACTCATCTGAGCTGGACGTCGATGAGAACACAGACATCCTTCTGCTCAGTGCTGTGGACCACATCCTGCAATACGTGGATCTGCATTTCCAGGACTGTGCAGCAACATACCCTAAACTGTCTCTTTAAAAAGACTGtgaaatgttatttaaaaatGCATTACATATGTTTATAATGTTTTTTGACTTGCTTGCACTATTGTTAActttttaatttgatttgatttaatttgtccTTTACATAAGTCTTGCTTTGACTAAGACAAATAAGTAAAAGCCATTTTGAACGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18186 lncRNA downstream 40551 16674193 ~ 16682680 (-) True G15491
TU18171 lncRNA downstream 130264 16579810 ~ 16592967 (-) True G15481
TU18141 lncRNA downstream 236484 16485486 ~ 16486747 (-) True G15454
TU18145 lncRNA downstream 257978 16458862 ~ 16465253 (-) True G15457
TU18139 lncRNA downstream 270427 16452605 ~ 16452804 (-) True G15452
TU18206 lncRNA upstream 45998 16772605 ~ 16772823 (-) True G15510
TU18212 lncRNA upstream 49597 16776204 ~ 16776416 (-) True G15516
TU18217 lncRNA upstream 54401 16781008 ~ 16781244 (-) True G15521
TU18285 lncRNA upstream 66051 16792658 ~ 16792910 (-) True G15584
TU18287 lncRNA upstream 68776 16795383 ~ 16795720 (-) True G15586
XM_036953607.1 mRNA downstream 114404 16605373 ~ 16608827 (-) True LOC118941208
XM_036953669.1 mRNA downstream 114405 16605373 ~ 16608826 (-) False LOC118941208
LOC118966506 mRNA downstream 121594 16596809 ~ 16601637 (-) True LOC118966506
XM_021565009.2 mRNA downstream 290622 16426112 ~ 16432609 (-) True LOC110491485
XM_036953031.1 mRNA downstream 307589 16339247 ~ 16415642 (-) True LOC110531543
XM_036954236.1 mRNA upstream 78023 16804630 ~ 16809819 (-) False LOC110492040
XM_021566050.2 mRNA upstream 78023 16804630 ~ 16814764 (-) True LOC110492040
XM_021566167.2 mRNA upstream 111528 16838135 ~ 16871991 (-) False LOC110492105
XM_021566250.2 mRNA upstream 111528 16838135 ~ 16871991 (-) False LOC110492105
XM_021566330.2 mRNA upstream 111528 16838135 ~ 16871992 (-) False LOC110492105
TU18158 other downstream 191755 16531047 ~ 16531476 (-) True G15470
TU17863 other downstream 506935 16189004 ~ 16216296 (-) True LOC110531395
TU16758 other downstream 1382350 15334079 ~ 15340881 (-) True LOC110488740
TU16702 other downstream 1539689 15182541 ~ 15183542 (-) True LOC110488330
TU16701 other downstream 1541168 15178546 ~ 15182063 (-) False LOC110488330
TU18315 other upstream 134042 16860649 ~ 16871928 (-) True LOC110492105
TU18890 other upstream 404813 17131420 ~ 17136357 (-) False G16100
TU18891 other upstream 405114 17131721 ~ 17136357 (-) False G16100
TU18888 other upstream 405196 17131803 ~ 17136357 (-) False G16100
TU18952 other upstream 528629 17255236 ~ 17257241 (-) True G16161

Expression Profile