RNA id: XM_036954236.1


Basic Information

Item Value
RNA id XM_036954236.1
length 2947
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110492040
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16804630 ~ 16814764 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACCAcatgtacagaatacaaaaaaaTGGGCATGAGCAAAAGCTGAAATACCCTTTTTACTATTATGCAATGTGAAACTATTTTGTCAAATGGGAGGATCTTTGCAGCCTTCGGGCATGCTCAGTAAGCCTGTTTTCGTCTAAGAACCTGTAACCATCAATCACCAGTCACGGTTTTCCCCGTTTGCTCTAGCGCTCCACACCCAGGAAAGATGTTTATTAGCCCGTTACCCTCTATGCGGCCTTACATAATATATTAGGACAGCCCACATCGCGCAAAAGGGAGCTGTGGCCGCGACTACTTAATCAGTTTTGTTTTGCAAGTGTAGCGACAATAATATTAAGATAGTACCAAAACGTTATTTGACAACTTGAACAAGGAACAATAACATTTTAACATAAGTATACTGTTTGGAACTAACAACCCTCACGATGATTTTCGACAAATTGAAAAGGTTGTACATCGTCTTCGACTCTCCAGAAATCGATTCCCCTCCAGTTTTCAGCAGTGGGGACGTGGTGTCTGGAAAAGTTGTTTTGAACCTTTCAGGTGAAAGTAAAGTGCAGTCGTTGAAGTTGCACGCAGAAGGTTTTGCGAAAGTGCATTGGACCGAATCTCGTTCGGCTGGGTCCAGTACTGCCTATACTCAAAACTACAGCGACGAAGTGGAGTATCTCAACAGGAGAGAAGTTCTTCTGCAAGCAGATAATGGCGAGCACACCCTCCTCTCTGCTGGAAGACATGAATTCCCATTTAGTTTCCAGTTGCCTGAAGAGACACTGGTGACATCCTTCGAAGGCAAGCATGGCAGCATCCGTTACTGGGTGAAAGTGAAGCTGCATAGGCCCTGGGCTACAGTGAGGAAGATCAAGAAGGAGTTCACAGTCATCGAGCCCATTGACATTAACACACCAGCCTTATTGGCTCCCCAAGCTGGCACTAAAGACAAGATGGCACGGGTGTGGTACCGCAATTTTGGACAGGTGTCAATAACCGCTAAGATCGATCGTAAAGGTTACACACCAGGTGAGGTGATTCCTGTATTTGCTGAGTTTGACAATGCCACCTCACGCTCTGTGGTGCCCAAGGCCTACATCACACAGACGCAGACGTTCATCGCCCGGGGCACCATGAAGCAGAAGCAAGCGGTGGTGGCCACGCTTAGTGGTGATGTGGTGGGCGCCCAGCGCAGGGAGACCTGGCATGGCCGTGCCATCAAGATCCCTCCTGTCGGGCCCTCCATCCTGCAGTGCCGCATCATCAAAGTGGAATACATGCTCAGGGTGTGTGTGGATGTTCCTGGGACCTCCAAGCTGTGTCTAGAGCTGCCCCTGGTCATGGGCAccatccccctccatcccttTGGTAGCCGCACCTCCAGCGTCAGCAGCCAGTACAGTGTTAACCTGGAATGGCTCCGCATGGCCATCCCCGAGCAGCCTGAGCCTCCTCCTGACTATAGCTCTGTGGTGACGGATGAGGAGGCTGAGCGGAACATTACGGCCCCCCATCCTGAGGAGGACCTCAGTGGGATTATGGAGCACCCTCTCAGGGCCTTTGTCCAGGAGTTCCGCTTCCGACCTCCTCCGGTGTACTGCGAGATCGACCCAAATCCTCAGCCCCTCAACATGAGACGTCGCTGCATGACGTGTTGAACCATAAGCGTCACTTGAGCGTCACACGATGACCTTATTTAATTAAACGAAGCAAAGAGATTTGTCTTCCCCTGGATTACTCTCCGAAACTGGTGACTCAGTCCAAAGATGTGGCTTCTGTTGTTGGAAGGGACTTAGAGTACCACTGAGAGGCTGGAAAAGAAGATGGAGGCGACAGGACCTGCTTGTGGATGAAGTTCTTTTTAAAAAAAGGAAGGGGGACATGTTAAGTTCAACAAGAAAAGGAAATAACTTCTCCCATGGTTCCTGTCCTCCCAAGTGATTCTGACTCAGGATGATGAAATCGAGTCACCCCTCCTGCCAATCAATGAACCCCcacacaataaatgttttgtgTTTGGGGAAATATTGGGGGAGGATCACTTGATTTTTGTGAGGGAGAGTTGGAGTTGCAGACAATGCCTCAAAGAATGCAATGGTATATCTTCAGTTAACATCTGCAAATGATCAGCTGGCTTGGTGTTAAGAGGCACCTGTAACTCATCTTTTAATACCCAACTCCCCCTTGCCTGGTAACATGTAGTATGACTCAATGATGATGAATAATTCTACTGTTATTCAAGTAGCACTTATCTGAGACTGTTTGGTGAGGAGGAGTTGAGTCGGCAGGTTTCGGCATTTAGCCGGGTAATACTATGCAAAAGGGAACTTGAATCCTGTAGTATCTGAAAATGTACTGAAATGATTCCATGAGAGATTCTGATATAGCAGATGTCCTCTGTATGGGGATGTTCAATGTATTCTGAATCTTAATTTGACAGTAATGGATGAAAACTAAACGGTTGAGTTTTTTGCATGTGGAAGAATTCAAGAGAAAAGTTAGAGTTGTGTAAAAGCTAGTTCTATAGCACAAACCTGGGCATAACATTTTCTCAGAAAATAGTCTAGGACTGATTTAGAAACAGTGACACGAGGAAGAAAAGTGTGTTTGTAGCTGCTGCAAGCTCAAATGATTAGCTTTAGAAATGGCTAAGGGGGAAATATCAGAGCCATGTGGTTTATGTGTTTGATTCAATCCAGATGCCTTGTTTTCCAACCGTCTGTAAACGTCTGCAGAAAGTTTGTTCAGCGTCACATTAAGCCTTAAGTTGGAGATGTCACTTTGAAGTGTACTAAAGAACTGACTTCAGGTCAGCAATGCAGCTTACGTGTCATGCGCAGTGCAGCACACACCTGAAATTTAATGTATTTTATACAAACGCCGTTGTTGATTCACAGAACTTGCCAAAGTTTTTGTAATTCCCTTTTCTAATAAAAACACTGAAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18290 lncRNA downstream 6385 16798015 ~ 16798245 (-) True G15589
TU18289 lncRNA downstream 7261 16797034 ~ 16797369 (-) True G15588
TU18287 lncRNA downstream 8910 16795383 ~ 16795720 (-) True G15586
TU18285 lncRNA downstream 11720 16792658 ~ 16792910 (-) True G15584
TU18217 lncRNA downstream 23386 16781008 ~ 16781244 (-) True G15521
TU18299 lncRNA upstream 16240 16826059 ~ 16827593 (-) False G15594
TU18297 lncRNA upstream 16681 16826500 ~ 16827593 (-) True G15594
TU18329 lncRNA upstream 45820 16855639 ~ 16856230 (-) True G15621
TU18382 lncRNA upstream 96364 16906183 ~ 16906414 (-) True G15667
TU18397 lncRNA upstream 109174 16918993 ~ 16920932 (-) True G15682
XM_036953979.1 mRNA downstream 78023 16723231 ~ 16726607 (-) False LOC118941412
XM_036954047.1 mRNA downstream 78023 16723231 ~ 16726607 (-) True LOC118941412
XM_036953607.1 mRNA downstream 195803 16605373 ~ 16608827 (-) True LOC118941208
XM_036953669.1 mRNA downstream 195804 16605373 ~ 16608826 (-) False LOC118941208
LOC118966506 mRNA downstream 202993 16596809 ~ 16601637 (-) True LOC118966506
XM_021566167.2 mRNA upstream 28316 16838135 ~ 16871991 (-) False LOC110492105
XM_021566250.2 mRNA upstream 28316 16838135 ~ 16871991 (-) False LOC110492105
XM_021566330.2 mRNA upstream 28316 16838135 ~ 16871992 (-) False LOC110492105
XM_021566587.2 mRNA upstream 75108 16884927 ~ 16904976 (-) False LOC110492327
XM_021566754.2 mRNA upstream 75108 16884927 ~ 16904976 (-) True LOC110492327
TU18158 other downstream 273154 16531047 ~ 16531476 (-) True G15470
TU17863 other downstream 588334 16189004 ~ 16216296 (-) True LOC110531395
TU16758 other downstream 1463749 15334079 ~ 15340881 (-) True LOC110488740
TU16702 other downstream 1621088 15182541 ~ 15183542 (-) True LOC110488330
TU16701 other downstream 1622567 15178546 ~ 15182063 (-) False LOC110488330
TU18315 other upstream 50830 16860649 ~ 16871928 (-) True LOC110492105
TU18890 other upstream 321601 17131420 ~ 17136357 (-) False G16100
TU18891 other upstream 321902 17131721 ~ 17136357 (-) False G16100
TU18888 other upstream 321984 17131803 ~ 17136357 (-) False G16100
TU18952 other upstream 445417 17255236 ~ 17257241 (-) True G16161

Expression Profile