RNA id: TU18329


Basic Information

Item Value
RNA id TU18329
length 592
lncRNA type intronic
GC content 0.39
exon number 1
gene id G15621
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16855639 ~ 16856230 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttgacttgcctgcacagagccttgacctcaaccccacgaacacctttgggatgaattggatcgccgactgcgagccaggcctaattgcccaacatcagtgcccgacctcactaatgctcttgtggctgaatggaagcaagtccccgtagcaatgttccaacatctaggggaaagccttcccagaagagtggaggctgttatagcagcaaaggggggaccaactccatattaatagcCATTATTTGTTCCTGTtctcaagaaagctaaggtaactgagctaaacgactatcgccctgtagcactcacttccgtcatcatgaagtggtttgagagactagtcaaggatcatatcacctccaccctacctgacaccctagacccactttaatttgtttaccgccccaataggtccacagacgacgcactgcacactgccctaccccatctggacaagaggaatacctatgtaagaatgctgttaatcgactacagctcagcatttaacaccatagtaccctccaaactcgtcattaagcttgagaccctgggtctcaaccccgccctgtgcaactgggtcctggactttctgac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18299 lncRNA downstream 28046 16826059 ~ 16827593 (-) False G15594
TU18297 lncRNA downstream 28046 16826500 ~ 16827593 (-) True G15594
TU18290 lncRNA downstream 57394 16798015 ~ 16798245 (-) True G15589
TU18289 lncRNA downstream 58270 16797034 ~ 16797369 (-) True G15588
TU18287 lncRNA downstream 59919 16795383 ~ 16795720 (-) True G15586
TU18382 lncRNA upstream 49953 16906183 ~ 16906414 (-) True G15667
TU18397 lncRNA upstream 62763 16918993 ~ 16920932 (-) True G15682
TU18407 lncRNA upstream 72415 16928645 ~ 16928849 (-) True G15690
TU18413 lncRNA upstream 75411 16931641 ~ 16931859 (-) True G15696
TU18436 lncRNA upstream 76210 16932440 ~ 16932712 (-) True G15718
XM_021566050.2 mRNA downstream 40875 16804630 ~ 16814764 (-) True LOC110492040
XM_036954236.1 mRNA downstream 45820 16804630 ~ 16809819 (-) False LOC110492040
XM_036953979.1 mRNA downstream 129032 16723231 ~ 16726607 (-) False LOC118941412
XM_036954047.1 mRNA downstream 129032 16723231 ~ 16726607 (-) True LOC118941412
XM_036953607.1 mRNA downstream 246812 16605373 ~ 16608827 (-) True LOC118941208
XM_021566587.2 mRNA upstream 28697 16884927 ~ 16904976 (-) False LOC110492327
XM_021566754.2 mRNA upstream 28697 16884927 ~ 16904976 (-) True LOC110492327
XM_036954731.1 mRNA upstream 52972 16909202 ~ 16916433 (-) False LOC110492528
XM_021566956.2 mRNA upstream 52972 16909202 ~ 16916436 (-) True LOC110492528
XM_021567287.2 mRNA upstream 87349 16943579 ~ 16961077 (-) True rab3ab
TU18158 other downstream 324163 16531047 ~ 16531476 (-) True G15470
TU17863 other downstream 639343 16189004 ~ 16216296 (-) True LOC110531395
TU16758 other downstream 1514758 15334079 ~ 15340881 (-) True LOC110488740
TU16702 other downstream 1672097 15182541 ~ 15183542 (-) True LOC110488330
TU16701 other downstream 1673576 15178546 ~ 15182063 (-) False LOC110488330
TU18315 other upstream 4419 16860649 ~ 16871928 (-) True LOC110492105
TU18890 other upstream 275190 17131420 ~ 17136357 (-) False G16100
TU18891 other upstream 275491 17131721 ~ 17136357 (-) False G16100
TU18888 other upstream 275573 17131803 ~ 17136357 (-) False G16100
TU18952 other upstream 399006 17255236 ~ 17257241 (-) True G16161

Expression Profile