RNA id: XM_036954731.1


Basic Information

Item Value
RNA id XM_036954731.1
length 2052
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110492528
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 16909202 ~ 16916436 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACTGCTTTGGAAGGACAGCAAAATCGGAGACAGGAAAGCTGCGTTCCTTGTTAAATGTAGAATAACAATCGAAAACATTCTCTACAGATACGAAGAATATGGACAATAGTAAGCGGAATGTTGTTGTAACAGGAACTGAAAAAGCTGGGCTTGGGAAAGGACGTAGACCTGCATGTGTATGAGGTGCCTGTCGAGTACCAGGCAGTCCAGAGTTTGGTTCCGTCATTATGGAAGCAGTATCATCCCCAGTTAGTGGTCCATGTTGGAGTCTCGGGTATGGCCACCACCGTTACCTTGGAGAAATGTGGCCGTAACCTTGGCTACAAGGGTCTCGACAACAGCCGCTTCTGTCCCCATTCTCAGTGTTGCATTGAGGGGGGTCCTGACTGCATTGACTCTGTTATTGACATGGAATCGGTCTGCAAGAGAGTGACAGCCTCTGGCCTAGGTGTAGCAGTGTCCGTCTCAAAAGATGCTGGCAGATACCTCTGTGACTTCACCTACTACACCTCTCTGTACCTGAGCCACGGGCGCTCAGCGTTCGTCCACGTGCCTCCCATAGCAAAGCCTTATAGTGGAGAGGACCTGGGTAGAGCCCTTCAAGCCATCATACAAGAGATGCTGAACATGCTAGACAGAGCCGAAGAGAAGATCCACTGCCAGCACGTGCACTAAGTGACATGCTAGACAGAGCCGAAGAGAAGATCCACTGCCAGCACGTGCACTAAGTGACCTGCGAAAGCCAACTGCCTTTACCCCTTACACACAGGAGATATTATGCAGTTAACCACAAATACCCCAATAACGTGCAAATGAGGAAATGGCAACGAAACGGACACTTCCAGTTGACTCATTCCACAGACATTTTTTCACGTTCTTCGTTGATGTTGCCTCAAGCACTTTACCTGGcccagtatttttttttttttatcttagtGGTTATGGATAGAGGTGAGGTGAGTAAAAGCTGATCCAGGTCTAGTGTTTAGGTGTAACTTGAGCTTTCTCCACATCCGTGTTCTGGGGAATTTAACTGGAATTACTGGAATTGACAGAAGGGAGCCACCTGCTTGCGTTAAGAGTGCTACTCTTTTTTAATCTGTTTTCATGGTTTCCTGGTTTTGGCTCTTTATCCATACTTTCACTGTAATCTCAGAAACAGTGTATGGAAAATTCCTTTTCTACATCAACTCACTGTACaagttccacattatttattggGGTCTTTCCTTTTTCCTTTCAGTTATTTTAAGGGGAATTTCTGACTTTGGTTGTTACTCATCATCTTGAAGAGTTGTTTTTCTTACCAGCTTTTTCATTGAAGTCTGAGGCATCCACTTGTTGGTACTACTTAAGTCATGCTAGTACTTTCTGTATTTATGTATATTATTTAATGGTGTTAGCTTAAGGTGTTTAGCTAGATTTATATGTTCTGAATGTGCCTGAAACATTTTCTGTAAAGCATTATTTAAAGAGAAATTCACATTGTTTTTGCATATTTCCCCCGTTCATTATCTGAACATTTGTTTGTCGTTTTTtgtataaaaaatgttttaaaaaacaaaattCAGATAGTTACTTTTAAATGCAAAATGTTGCTCTTTTACATTGATAACGTATTGTTTCTTGAGTCTTTTTATTTATCAGAAGTTGTACATTTGCCTTCTTTTACTAAGGTATCAAGAAATGTGTTTTGACTGGTAGCTCTTTGGTATTGTTTGACAGATACGGCATTAGTTCAATGAACTTCATCAGATCAGTATTGTCACcggtttatttctctatttggttaggtcagggtgtgatttgggtgggcattctatgttttctatttctttgtttttggccgagtggttcccaatcagaggcagctgtctatcgttgtctctgattgggaatcatacttaggcagcctttttcccacctatgttgtgggtaattatttattttctgtgagtgtttgtgtgcgccACGGTTGCGTCATGTTCGGTTTCTGTTTACCTGTTTTTTTTGTGAAAGTTTCACTTTATTAAAAGATGTGGAATTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18382 lncRNA downstream 2788 16906183 ~ 16906414 (-) True G15667
TU18329 lncRNA downstream 52972 16855639 ~ 16856230 (-) True G15621
TU18299 lncRNA downstream 81609 16826059 ~ 16827593 (-) False G15594
TU18297 lncRNA downstream 81609 16826500 ~ 16827593 (-) True G15594
TU18290 lncRNA downstream 110957 16798015 ~ 16798245 (-) True G15589
TU18397 lncRNA upstream 2560 16918993 ~ 16920932 (-) True G15682
TU18407 lncRNA upstream 12212 16928645 ~ 16928849 (-) True G15690
TU18413 lncRNA upstream 15208 16931641 ~ 16931859 (-) True G15696
TU18436 lncRNA upstream 16007 16932440 ~ 16932712 (-) True G15718
TU18456 lncRNA upstream 48089 16964522 ~ 16964888 (-) True G15737
XM_021566587.2 mRNA downstream 4226 16884927 ~ 16904976 (-) False LOC110492327
XM_021566754.2 mRNA downstream 4226 16884927 ~ 16904976 (-) True LOC110492327
XM_021566330.2 mRNA downstream 37210 16838135 ~ 16871992 (-) False LOC110492105
XM_021566167.2 mRNA downstream 37211 16838135 ~ 16871991 (-) False LOC110492105
XM_021566250.2 mRNA downstream 37211 16838135 ~ 16871991 (-) False LOC110492105
XM_021567287.2 mRNA upstream 27146 16943579 ~ 16961077 (-) True rab3ab
XM_021568053.2 mRNA upstream 220583 17137016 ~ 17140392 (-) True LOC110493631
XM_021567862.2 mRNA upstream 224089 17140522 ~ 17173207 (-) False LOC110493506
XM_021567934.2 mRNA upstream 224089 17140522 ~ 17173207 (-) True LOC110493506
XM_021567512.2 mRNA upstream 256969 17173402 ~ 17220957 (-) True LOC110493215
TU18315 other downstream 37274 16860649 ~ 16871928 (-) True LOC110492105
TU18158 other downstream 377726 16531047 ~ 16531476 (-) True G15470
TU17863 other downstream 692906 16189004 ~ 16216296 (-) True LOC110531395
TU16758 other downstream 1568321 15334079 ~ 15340881 (-) True LOC110488740
TU16702 other downstream 1725660 15182541 ~ 15183542 (-) True LOC110488330
TU18890 other upstream 214987 17131420 ~ 17136357 (-) False G16100
TU18891 other upstream 215288 17131721 ~ 17136357 (-) False G16100
TU18888 other upstream 215370 17131803 ~ 17136357 (-) False G16100
TU18952 other upstream 338803 17255236 ~ 17257241 (-) True G16161
TU19906 other upstream 1173447 18089880 ~ 18094938 (-) False LOC110497564

Expression Profile