RNA id: XM_021568053.2


Basic Information

Item Value
RNA id XM_021568053.2
length 1490
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110493631
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17137016 ~ 17140392 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCTTGGGAATTTTCTATGTAGTTAAGATATGTGATGGACTGTTATGTACTGCTATTTCTCTAATGTTGTGACTATATACATTATTAATGATCTATTAATGTTAATTCAGTCAATCAAGAATGATTCTACTCTGGCCTAAGTTTGAAGTTTGTTCTTATTCCTGTTTTGCCTACCAATTTGTCCCTGTATAAGAAGTGTCTGAAACGATGATATGGCTGTTGTGGGATGTCCAATGAGAGAGTTTGGTCACAAGAATCCATCTCATCATCAGCTAAGGATGATTGTTGTAGTCATTGGTGGAAGGAGCTCCAACCCACTCACTCTTCAAATTGGTCACAGTGTTGTCTGAGGGAAATGTTAAGGAAGGCTCTGGCTTCAGTACCTGTAAGCAACATGAAGTTTGCATCGGTGTTAGTCCTTCTTTTTTTCTGCTCTACTTTCAAGAAATCCCATGGAAAGTCAAAGCCCAAACCGGGCTGTGAATACCCCCCGTCTCAGTGGTgtaggagtttggaaattgcaaTAGAATGTGGGGTTCAGAAGCAGTGTCTGGAGCTCAATGCCACCAGGCCCAATTCAGCAGTACCCAGAGTTGTGGTGACCCTGTACTATGAGAGCCTGTGTCCAGGCTGCAGGGTCTTCCTCACCCAGCAGCTCTTCCCTACCTGGGCCATGCTCCATGATATCATGGAGGTAAAACTGGTGCCCTACGGCAATGCGCAGGAGCTTCCCTCAGGGAATTCTCCCTTCACCTGTGAACATGGGGAACCAGAGTGTCATAGCAACATGATTGAGGCATGTATTCTACATTCAGTGGGTCTGTACTCTGCCTTCCCTGTCATTGACTGCATGGAATCTGCAGCAAATGTTCTCGCCGCCGCCCAACCTTGCTTACAGCTACACGTCCCCTCCATGACGTGGGACAGTGTCACAACCTGTGTTAAGGGAGAGCTCGGCTTCAAACTTATGCATGAGAACGCCCTGAAGACCAATGCTCTCAGTCCAGCCAAAACACACGTCCCCTGGGTGACCATTAATAAGGAATACACAGGTGACTTTCAGGACAAAGCAATGTCATCACTTTTTAACTTGGTCTGCAAGATGTATAAGGGAGGAAAGCCCCCTGCCTGCACCGGAGCACAGAAGAAACTAGACAGGAGTCTGTGCTGAAACCAACAGTCATTCTGCATGCCATTCAtgttttcaaaatatattttgttacagTATAAGTAccagtttctctcattcttttgAAAGACAATGCAAGTCCAACATAAATCATAAGTCGCTCATTTATTTACTCTTGTTGCTGAAATGTATTGTAATACTTGTTTTATTCTGTGTGATAGTGTCAAATAACTCCATATGTATTGATCATTTAACCCAATGCTAACAAGTTACGGTTCCATTTTGTATGAACAGATTTCTCTTTCAAGCCTAAGAGTGCATATAACTGTGGGGTCTGAAATTAAAcatccttgataaaga

Function

GO: NA

KEGG:

id description
K08059 IFI30, GILT; interferon, gamma-inducible protein 30

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18889 lncRNA downstream 659 17132578 ~ 17136357 (-) True G16100
TU18759 lncRNA downstream 128688 17005929 ~ 17008328 (-) True G16004
TU18461 lncRNA downstream 164653 16972129 ~ 16972363 (-) True G15742
TU18456 lncRNA downstream 172128 16964522 ~ 16964888 (-) True G15737
TU18436 lncRNA downstream 204304 16932440 ~ 16932712 (-) True G15718
TU18935 lncRNA upstream 90988 17231380 ~ 17231678 (-) True G16144
TU18941 lncRNA upstream 98152 17238544 ~ 17238828 (-) True G16150
TU18949 lncRNA upstream 113398 17253790 ~ 17254418 (-) True G16158
TU18951 lncRNA upstream 117414 17257806 ~ 17258199 (-) True G16160
TU18953 lncRNA upstream 121986 17262378 ~ 17262650 (-) True G16162
XM_021567287.2 mRNA downstream 175939 16943579 ~ 16961077 (-) True rab3ab
XM_021566956.2 mRNA downstream 220580 16909202 ~ 16916436 (-) True LOC110492528
XM_036954731.1 mRNA downstream 220583 16909202 ~ 16916433 (-) False LOC110492528
XM_021566587.2 mRNA downstream 232040 16884927 ~ 16904976 (-) False LOC110492327
XM_021566754.2 mRNA downstream 232040 16884927 ~ 16904976 (-) True LOC110492327
XM_021567862.2 mRNA upstream 130 17140522 ~ 17173207 (-) False LOC110493506
XM_021567934.2 mRNA upstream 130 17140522 ~ 17173207 (-) True LOC110493506
XM_021567512.2 mRNA upstream 33010 17173402 ~ 17220957 (-) True LOC110493215
XM_021568957.2 mRNA upstream 174092 17314484 ~ 17326759 (-) False comp
XR_002469236.2 mRNA upstream 174092 17314484 ~ 17326759 (-) True comp
TU18890 other downstream 659 17131420 ~ 17136357 (-) False G16100
TU18891 other downstream 659 17131721 ~ 17136357 (-) False G16100
TU18888 other downstream 659 17131803 ~ 17136357 (-) False G16100
TU18315 other downstream 265088 16860649 ~ 16871928 (-) True LOC110492105
TU18158 other downstream 605540 16531047 ~ 16531476 (-) True G15470
TU18952 other upstream 114844 17255236 ~ 17257241 (-) True G16161
TU19906 other upstream 949488 18089880 ~ 18094938 (-) False LOC110497564
TU19908 other upstream 949488 18089880 ~ 18094938 (-) False LOC110497564
TU19904 other upstream 952763 18093155 ~ 18094938 (-) True LOC110497564
TU20793 other upstream 1249731 18390123 ~ 18391533 (-) False LOC110497762

Expression Profile