RNA id: TU18889


Basic Information

Item Value
RNA id TU18889
length 3780
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G16100
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17131420 ~ 17136357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCATAATTTATTGGCATTTTCACTGAACTCcagaaatgtttttaaaaattacTGTTAAATATTTTTGGCTCCAGAAAAATTAAGATCGCTTACCgtacttacattttgacagacaaAATATACTACTGTCCAACATTGCGGATAAAAAAGACACACAGAACAATAACCGTAATGGTATACCATGTCAGTTTCAGCAAAGCAATAAAGGGACCAAGAGTCACCATTCTAACTTCTCAGACAACACATTTAACACTGAATGACACTGATTTATGTACGTTTTACCCACGATACAGCTCAGCTCCTCTCCAGTCACAATTTAAGgctcttatttgagctgtttgcTTATTATTACCAAACATGAGTGAATAGAATATGGTCAAGTTATTTATGAATACTTGTGTACTTTTCCCCCTGCCTTACCAGGAAAAGAGTAAGCGGGAAATACTTTAGTGTTAGTTCCCAGGCAAGTTTACCATGCTGGAGCTGTTGTTGAATTTTGTTGGTTATTTTCAGATTTCACTGTCCTCCATTAAGGATAATTCAGTGATCTTttttatatacactgaacaaaaatataaaacgcaacaatttcagagtttactgagttacagctGTGTTTCAGCTGTGCGAAGCATCCCAAATATGCTCAATGTGTGATATTTCTGGTGActgtgcaggccatggaagaactgggacatttttagcttctaggaattatgtacagatccttgcattatcatgctgaaacatgaggtgatggcggcagattaatggcacgacaatggccctcacgatctcatcacggtatttctgtgcattcaaattgccatcgataaaatgcaattgtgttcgttgtctgtagcttatgcctgcaaaTACCATAACTCCactttgttcacaacgttgacatctgcaaattgctcacccacacaacaccatCTGCCCGATAAAGTTGAAACTGGGAtttatctgtgaagagcacacttctccagcgtgccagtggcatCAGCTGTCCGCGTAGCTGGTCTGAGACGATCCTACAGGTGTAGAAGCCGGATGTggcggtcctgggctggcgtagttacacgtgttctacggttgtgaggcccattggacatactgccaaattctctaaaattacgttggtggcggcttatggtagagaaattaacattcaattctctggcaacagctctgttggacgttactgcagtcagcatgccaattgcacactcactCTAAACTTGTGTGACATTATGTTGTgagaaaactgcacattttatagtgGCCTTTATTGTGCCCAGCACAATAAATTATCATgccatttaatcagcttcttgatatgcctcacctgtcaggattatcttggcaaaggagagatAAGACATTTGAGAAGCCTTTTGAGCgtatggggggaaaaaaatgttcAGTGTACTTATATTTGGCAGGGGCTAGTTAAGTTGTACAGTATTGGTTTAACTTAAAAATTAGGGTGCAATCAGCGAACGCAATAATATAAATTAACGTTGAAAATTGATGTTTGTGGTCAATTGacattcacatactgtaggtaaaaGCTATAGCCCTGTGAAGAGCAGAGCATAAGGGCCCCCtgttcaatctgtatcgctgaagcgttacagattacGCGACATGATGGTAACttctgattgagccgacatatgcagcgtttactgtGCAGTCTCCGTTAtacaggaacattgcctttaaataccaatcacgctgtaacgctgaacttctgcgatacggattgaatagagctctACATCGAAGCATTACATCCAACatataaagtcaaggtattacaAATTCCATTAAAATTATAGCATAACTAACTGATAATTGCTGAAACTCAACACATTTTAAAGTCAAACTTTGACATGATTACAATCAACAGTTCAGAGAGAACTTTGTTCAACATTTCATAACGACTTAGGTTGGCAAATTTTGCGCAAATTCCAAAGATTTTCCCTATAAACTAGTTTCCTTCAAGAACAAATCAAACAAGACATTGGGGGCTTATTCAGGCGAATGAAAAAGTATCCAATGTCAATACAGAATGTACAGTATTGTGTAAATCAGACATGGTTTTCTGTTGTGTACTACAGGGAATAATATCAACGCtgttcattacatttctatctgcaactttCAAAGCATCACACACTACTGAATAAGCCCTAATTAGTCCACACTGCAGCCCTGTtcagaaacaaccactaacccttccacacttgtggagatctgacaGGATTTTATAGGTTTAAAAGGttcaatgcagccgtttttatctcaatatcaaattatttctgggtaacaattaagatCATTTTCAATTAAAATTCTCAAAAAGAAGCAAATGGTTTAGCAAAATACCATTTCTCCAggaagaatttagctaggactgtcagAGTGGTCCGAGGAGCCTAATGGGAGGGATGTGCAACCTGAACTAGCTGTTAAAGTGCATTATCATAAttgtcacaatttcacagtattattccaacctcagtgttgaaatgtatatataaaaGACAGGatatcacgtttttgactgcattgCCCCTTTAAGCTACATGACAATGTCTCCACCTCACTCTCTGCTAGGTTGAATTTTCTCcctattgcttacacctatccattCCTCTCAGCTCTAGGCGTTAggcctaggggttgtttctggacaggaaCTACAGCCTTCCATGGCTGTCCACTAAAATCATGGTTTGGCTCAAGTTCTTTAGAACTGAATGGGCTTCCTCTACAACAAAATTTGTAAAGTGTTACTGTATGATGGAGTCACCCTGACAATGATGCTTATAAAGCTCAGAGACAAACAGACCTGGGGTGTGTTCGTTACGTCTTGCAACGGAAATCGTTTACCAAAGCAAACCGAGCAAATGGAACGAAATGGGGACAGACCTACCTGAATTTTTCCAGTAGAAACCAGTTTTCCATTTGGAGTAAACTGTTTGCAACAGAATCGGTGAAATGAATACACCCATGGTGAGGACATACCCAATATATACAACAAAACGGaaccatttcaaatcaaatagaAAATGTGACAACGTAAAACATAAtcacatagaaacatacaacTTTACAAACATGAGTGTAAGCGGTGTTAGTCTAGATTTAAAACAACTTGTATTGGGTACCCCAATCAACCATAGTACTTCGGGATTTTGAAATACAATTTACTGGTACTGTTCgtttcatattttatatttaaattGCTTTAGTTCTCAAATTCATTAATTAACTTTTCAATTGAGATCAATAGAGGTTGCCAGAcaaataaatatgtatttttgcATAACTTGAAGCGGTAAGGTTCTAAGAGCTGTTTGTCATCAGTAGCACAACTCTAAACAGGCAGTCTCCGTTAAGGGGTACCCAAGACGTCCATGCTACATTAAAATAATTTATATCTCGTCATACCCTGAGGTTTAAGTTACAATTCTCTCACTATTTAGGTACATACTGGATTTGGTAAAACATTCACAGAATTCTCAGAGACAAACTAAATAAAATATACTAGTTTATGCTgactgaattcaaaatgtgtGGTGCAAAAGTTCCAAGACCCTGTAAAAATGTTACAATCCTTGCAATATTCCATTGAATATCTATATTCCATCATTTTGAGGAAGACATTGTTTTCTCAGTATAATTCCGTGCTTCGATCAGGAGACATTGGTGAGACTGGCTAGCTTGTGGTCAGTTCTCTACCTTCGAGTCTAAGACACTTTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18759 lncRNA downstream 124250 17005929 ~ 17008328 (-) True G16004
TU18461 lncRNA downstream 160215 16972129 ~ 16972363 (-) True G15742
TU18456 lncRNA downstream 167690 16964522 ~ 16964888 (-) True G15737
TU18436 lncRNA downstream 199866 16932440 ~ 16932712 (-) True G15718
TU18413 lncRNA downstream 200719 16931641 ~ 16931859 (-) True G15696
TU18935 lncRNA upstream 95023 17231380 ~ 17231678 (-) True G16144
TU18941 lncRNA upstream 102187 17238544 ~ 17238828 (-) True G16150
TU18949 lncRNA upstream 117433 17253790 ~ 17254418 (-) True G16158
TU18951 lncRNA upstream 121449 17257806 ~ 17258199 (-) True G16160
TU18953 lncRNA upstream 126021 17262378 ~ 17262650 (-) True G16162
XM_021567287.2 mRNA downstream 171501 16943579 ~ 16961077 (-) True rab3ab
XM_021566956.2 mRNA downstream 216142 16909202 ~ 16916436 (-) True LOC110492528
XM_036954731.1 mRNA downstream 216145 16909202 ~ 16916433 (-) False LOC110492528
XM_021566587.2 mRNA downstream 227602 16884927 ~ 16904976 (-) False LOC110492327
XM_021568053.2 mRNA upstream 659 17137016 ~ 17140392 (-) True LOC110493631
XM_021567862.2 mRNA upstream 4165 17140522 ~ 17173207 (-) False LOC110493506
XM_021567934.2 mRNA upstream 4165 17140522 ~ 17173207 (-) True LOC110493506
XM_021567512.2 mRNA upstream 37045 17173402 ~ 17220957 (-) True LOC110493215
XM_021568957.2 mRNA upstream 178127 17314484 ~ 17326759 (-) False comp
TU18315 other downstream 260650 16860649 ~ 16871928 (-) True LOC110492105
TU18158 other downstream 601102 16531047 ~ 16531476 (-) True G15470
TU17863 other downstream 916282 16189004 ~ 16216296 (-) True LOC110531395
TU16758 other downstream 1791697 15334079 ~ 15340881 (-) True LOC110488740
TU16702 other downstream 1949036 15182541 ~ 15183542 (-) True LOC110488330
TU18952 other upstream 118879 17255236 ~ 17257241 (-) True G16161
TU19906 other upstream 953523 18089880 ~ 18094938 (-) False LOC110497564
TU19908 other upstream 953523 18089880 ~ 18094938 (-) False LOC110497564
TU19904 other upstream 956798 18093155 ~ 18094938 (-) True LOC110497564
TU20793 other upstream 1253766 18390123 ~ 18391533 (-) False LOC110497762

Expression Profile