RNA id: XM_021568957.2


Basic Information

Item Value
RNA id XM_021568957.2
length 3110
RNA type mRNA
GC content 0.51
exon number 19
gene id comp
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 17314484 ~ 17326759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaatcagaggcagctgtttattgttgtctctgattggggatcatatttaggaagccatttccccattggtattcgtgggatcttgtctacatttaATCAAAGTTGAGAGGACTCTGTCCGAAAGCACCATGATTTTGGGCCAGTGGGCTTCTGTGTTACGTGGACATTCCAAAGTGACGGGTTCCAGAGGACCTCCTGGGCGGAGGTGATGTCACTCTAGGAGAGATGTATAAAAGACatgcaggagaggagacagatcccactctctctgactctccaaACCCTGCTGCAGGAGCCTTCCCTGGTCCTACTTGAAGACGGGGCAGAATTTGGATAAACGACCTGGTTGAACCACACCAGACTTCACACAGTGGCTCCAGACTTCACACACCTTTACTTGTCAGTTGCCGTAGAGAAGTCTAAGGGAAAATAAGAACATGCTGTGGATCCTGGTGTTGGTGATTTCTCTCAGTGTGAGCAGTGAGCTAGTAGCTGGTCAGAGAGATGGAGAAATCATCAATCAGATCAAGGGAACAAATCAAGCTCTGGCTGAGATCAAAGAACTGCTGAAACAACAGATCCAAGAGATTGTGTTCCTGaagaacacagtgatggagtgTGAAGCCTGTGGCATGCAAGGTCCCCCTCGCCCCTCCTGTGACCCTAACCCCTGCCACCCGGGGGTAAAGTGCATTGAAACAGCTGGCGGCATCAAGTGTGGCCCCTGCCCTGAGGGCATGGTGGGCAACAGTACCCGATGCATGGATGTGGACGAGtgtgtggtgaAGCCTTGCCACATGGGTGTGCGCTGCATAAACACGTCCCCAGGTTTCCGCTGTGGCCCCTGTCCAACTGGCTACACTGGCCCTCAGGTGCAGGGAGTAAGCCTCTCCTATGCCACTAAAAACAAACAGGTCTGCAAGGACATCAATGAGTGCGAAGGACCCAAGAATGGAGGTTGTGTGGAAAATTCCAATTGTGCAAACACACCTGGCTCGTTTAGGTGTGGCCTCTGTAAGGCAGGCTATGTTGGGGATCAGCGCAAGGGCTGTAAGCCTGAGAGAGCATGTGGTAATGGCCAGCCCAACCCCTGCCATGCCAGCGGAGAGTGTATTGTCCAACGAGATGGGAAAATAGAGTGTCAGTGTGGGGTGGGATGGGCTGGCAATGGCTACTTCTGCGGATCTGATATTGACATTGATGGCTTCCCTGATGAGAAACAGGAATGTGCCGAGAGGAACTGTGCCAAGGATAACTGTCAAACGGTACCCAACTCTGGCCAAGAGGACGCAGACAAGGATGGTATAGGAGACGCCTGCGATGAAGATGCAGATGGGGATGGAATCTTAAATACACAGGACAACTGTGTGCTGGTACCAAACGTCAACCAAAGAAATGTGGACGAAGACGACTTTGGAGACGCCTGTGACAACTGCCGTATGATCAAAAACAACGACCAGAAAGACACTGATATTGATAGACTGGGTGACGAATGTGACGAAGACATTGATGGCGACGGAATCCCCAATAACCTGGACAACTGCAAAAGGGTTCCCAATACTGACCAGAAGGATCGGGATGGGGACAAAGTCGGAGATGCCTGTGACAGTTGCCCTTACGTTTCCAACCCTGACCAGTTGGATATGGACAACGACTTGATCGGAGACCCTTGTGACACCAATAAGGACAGTGATGGTGACGGTCACCAGGACTCTCAGGACAACTGCCCTGCGGTCATCAACAGCGCCCAGCTGGACACGGACAAGGATGGCCTGGGGGACGAGTGTGACAACGACGATGACAATGATGGTATTCCTGACCTTCTGCCCCCGGGACCGGACAACTGTCGCCTCATTCCCAACCCTCTGCAGGAGGACTCTGACGGTGATGGGGTTGGGAACCTGTGCGAGAACGACTTTGACAACGACACCATCATCGACAGCATCGATGTGTGCCCAGAGAACGCTGAGGTTACTCTCACAGACTTCAGGGCCTACCAGACAGTGGTGCTGGACCCGGAGGGAGACGCACAGATAGACCCTAACTGGGTGGTGCTCGATCAGGGTAGAGAGATCGTCCAAACTATGAACAGTGACCCTGGACTGGCTGTTGGTTACACGGCTTTCAACGGCGTTGACTTCGAAGGGACGTTCCATGTGAATACGGTAACAGACGACGACTATGCAGGCTTCATATTTGGCTACCAGGACTCTTCCTCCTTCTACGTAGTGATGTGGAAACAAGTTGAGCAGATCTACTGGCAGGCCAATCCGTTCCGAGCTGTGGCAGAACCAGGGATACAACTGAAGGCTGTAAAGTCCAACACGGGACCAGGGGAAAATCTACGTAACTCCCTGTGGCACACCGGAGACACCAGTGACCAGGTGAAGCTGCTGTGGAAAGATGCCCGCAACGTGGGCTGGAAGGACAAGACCTCCTACCGCTGGTTCTTGCAACACAGGCCCCAAGATGGATACATCAGGGTGCGTTTCTATGAGGGTCCTCAGCTAGTGGCAGACACAGGCATCATCATAGACACCACCATGAGAGGAGGCAGACTGGGCGTCTTTTGCTTCTCTCAGGAGAACATCATCTGGGCTAACCTACGCTACCGCTGCAATGATACAATCCCTGGGGACTTCGATACATACCAAGCCCAACAGGTCCAGCTGCAGTTCTAACAGGGCACGCACATCTGCCCAAATGAAGACTGAGAAGACAATGCATCTACAACCCCAACATTCCGGAACACGTCTCCCAGATGAACAGTACAGTGTTGCTTCTTAAATGGCACCCAAtctcctatatagtgtactacttttgactaaagactatatagggaatagggtgccatttcagacgtaCCCAGTGAGATTTCACTCAGCAAAATGGCGGCTGACATATTGATCACCACCAGCAATGACAGGATTTTCCTGTCTTACATTCGCTCCACAATAATTCCAGTTCTCAGGGGACTTTTGTCTACCATTACTCTGTCACCAATATATAaatgtgaaaatgtattttttttttataatcaggGTGTTGCCAATAAATGTGTTACATTGTGAGGGGACCCTATACAAATAAAAACTTTTGATATGCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18986 lncRNA downstream 586 17311287 ~ 17313898 (-) True G16194
TU18984 lncRNA downstream 5700 17308575 ~ 17308784 (-) True G16193
TU18983 lncRNA downstream 6497 17307780 ~ 17307987 (-) True G16192
TU18979 lncRNA downstream 10143 17303905 ~ 17304341 (-) True G16188
TU18977 lncRNA downstream 12106 17302118 ~ 17302378 (-) True G16186
TU19001 lncRNA upstream 8440 17335199 ~ 17338878 (-) True G16207
TU19002 lncRNA upstream 17352 17344111 ~ 17344377 (-) True G16208
TU19003 lncRNA upstream 17649 17344408 ~ 17347869 (-) True G16209
TU19020 lncRNA upstream 27643 17354402 ~ 17356908 (-) False G16216
TU19011 lncRNA upstream 27723 17354482 ~ 17356908 (-) False G16216
XM_021567512.2 mRNA downstream 93527 17173402 ~ 17220957 (-) True LOC110493215
XM_021567862.2 mRNA downstream 141277 17140522 ~ 17173207 (-) False LOC110493506
XM_021567934.2 mRNA downstream 141277 17140522 ~ 17173207 (-) True LOC110493506
XM_021568053.2 mRNA downstream 174092 17137016 ~ 17140392 (-) True LOC110493631
XM_021567287.2 mRNA downstream 353407 16943579 ~ 16961077 (-) True rab3ab
XM_021569135.2 mRNA upstream 3168 17329927 ~ 17343550 (-) True LOC110494221
XR_005038000.1 mRNA upstream 36140 17362899 ~ 17365492 (-) True LOC118942066
LOC110531963 mRNA upstream 64137 17390896 ~ 17392469 (-) True LOC110531963
XR_005038398.1 mRNA upstream 101518 17428277 ~ 17436513 (-) True LOC118942412
XM_021570393.2 mRNA upstream 189908 17516667 ~ 17518593 (-) False LOC110495007
TU18952 other downstream 57243 17255236 ~ 17257241 (-) True G16161
TU18890 other downstream 178127 17131420 ~ 17136357 (-) False G16100
TU18891 other downstream 178127 17131721 ~ 17136357 (-) False G16100
TU18888 other downstream 178127 17131803 ~ 17136357 (-) False G16100
TU18315 other downstream 442556 16860649 ~ 16871928 (-) True LOC110492105
TU19906 other upstream 763121 18089880 ~ 18094938 (-) False LOC110497564
TU19908 other upstream 763121 18089880 ~ 18094938 (-) False LOC110497564
TU19904 other upstream 766396 18093155 ~ 18094938 (-) True LOC110497564
TU20793 other upstream 1063364 18390123 ~ 18391533 (-) False LOC110497762
TU20791 other upstream 1064873 18391632 ~ 18394860 (-) True LOC110497762

Expression Profile