RNA id: XM_021574242.2


Basic Information

Item Value
RNA id XM_021574242.2
length 3797
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC110497762
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 18390123 ~ 18450517 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAAAACTCTCGCGATACTACTGGCGGAAGATGGCAGATGAATCTTCCGTACTAGTCAAATGATGCACTCTGTAGGAGCCGCTAATGTAGGGACAGTTTCGGTTATGAGAAAAGGGGACATAGTTGTAGTTACTTAGTTATTGCGGAGTATTTGTTACCCTTTTTAAATTTCATTCTTCTTTCCTTTTATTCGTTGAATAATATCGGATTTTCATGCTGTGCAATTTACAGATTTTGGGTGATCTAGACTACCACTGGCATTTTTGCCAGCGAAATACATATATTTGCACAGAGGGTCATCGTCAACGGCACCCTCTCCTCCGCTGTCAATTGTTTAGAAAATGACAGGAGAAAAGATCCGCTCCCTCCGCAAGGATCATAAACCGAGCAAAGAAGAGGATTTACTGGAACCGGACGAAGAGGCTGCAACTGGGACATTTACTTCAACTAAGACAAATAAGGGCAAAGCAAGTAAAATCTTTAATCACAAGTTGGTTAAATCTCCATCGACACAGCAGCAACATCAGAATCAGCAATCGCAGATAAATGCAAACACTAACACATTGTCAACCGCCGACGTTATCGAGGATAACAACAAAAACCCTGTAATCAGAACCGGGGAAGGCTTTCCAGTCCATGAATGTGTATTCAAAGGGGATGTCCGAAGCTTATCCTCGCTCATTCGAACTCAGAATATTGCTCAGAAAGATCTCCATGGAAACACACCCCTACACCTCGCTGTCATGATGGGTCACAAAGtcacagcGCTGCTAAGGAAGCTGAAACAGCAATCCAGAGAAAGTGTGGCGGACAAGAGGCCAAAGCTACTGAACGCCCTCAAAGAGCTGGGAGACTTTTACTTGGAGCTTCACTGGGACTTTCAAAGCTGGGTGCCTTTGCTTTCCAGAATCCTGCCCTCTGACGCCTGTAAGATCTACAAACAGGGGATCAACATCAGACTGGACACCACTCTCATAGACTTCACAGATATGAAGTGCCAACGTGGTGACCTCAGCTTCATCTTCAATGGCGACGCCATCCCCTCGGAGTCCTTTGTGGTGCTGGACAATGAACAGAAGGTGTACCAACGGATACACCACGAGgagtcagagatggagacagaggaagaggtgGACATCCTTATGAGCAGCGATGTTTACTCGGCCACTCTCTCCACCAAGTCCATCACCTTCTCCAGAGCCCAGACTGGCTGGCTGTTCCGAGAGGACAAAACGGAGCGTGTGGGGAATTTCCTGGCAGATTTCTACTCCGTGAACGGGCTGGTGCTGGAGTCACGGAAGCGTCGGGAGCACCTGACCGAGGAGGACATCCTGAGGAACAAGGCCATCATGGAGAGCCTGAGCAAAGGAGGGAACCTCATTGAGCAGAACTACGAGCCTGTGAGGCGACAGTCACTAACTGCACCTTCACCCAACACTATCTCCTGGGAGGAATATATCAACGCAGAGAACGGAAAAGCGCCTCATCTAGGAAGAGAGCTGGTATGCAAGGAGAGCAAGAAAAATTTCAAAGCGACCGTAGCCATGAGTCAAGACTTCCCGCTGGGCATTGAATCGTTATTAAACGTTCTGGAGGTGATAGCTCCCTTCAAGCACTTTAATAAACTCAGAGAGTTTGTTCAAATGAAACTCCCTCCTGGTTTCCCTGTCAAGCTGGATATCCCTGTCTTTCCAACCATTACGGCCACGGTGACTTTTCAAGAGTTCCGCTACGACGAGTTTGAGCAGTCCATCTTCACCATTCCCAATGAGTACAAAGAGGACTCCAGCCGCttccctgacctttaaccccttcGGCTGGACACTGGAAATCAAATTGTCGTAGGAGAACAAAAATAAATTGAATGTGTGAGATTTTAAATGGAAGTAAAAATATGTTGTGCATGTAATGTTTATAAAGGGATTATGCTTAACTGACCTGTAGTAAAGCACTGAATTCACTGTATGGGACATATGTGGAGAATAATAAATACTGTTCCACTGTAAACAACAAGTAGCTACTATCCAGAGCTTTGTTTGGAGTAGCGTCATTGAACTTTGGGCACTGTTTAGATGCACTACAGCCAgtctgtactgggctgtactaCAGTCTGTACTGGGCTGAGCAGCAGAGATGGCGGACCTACTGCACCAGTCGATACTCAACCCTTTGGTACATAATCTGAAACACATCCACCTGGAAGCAATGATAGAAATGCTAGGAATTTTAATTATACTAGAGCGGAGTTGTCTTATTCTACTTGACTGGCAGCAAGCGTTGCATTAAGTTATTACAAGCCTTGTTTTCATAATCTACCTAAACTATGTAACAGACTGTACACTTCAGTTAATGAAAATTAACCAGGTGTACATTTTTGAGATTACAAGTTCTGTAGATGATTAGGTACGAAATGAAGTACAATGTAAATTAACTTTTTACAGGTATGAAAAACCAGGCCTTTCCCTGCGCAAGGTGTAAATACCTCTTttgattgtattttttatttatttttgttaataTGGGAGTAGAGGTCTTCTATGACAGGAAGAGTTTCAGAAGTTTTATGCAAAGGTTAGTTGATGTTATTTGTCCCATGAGGTCATTGGTTTGTATCGTGGTGGCAATGGATATTTTTGTACATAGAATATTGGGCTGGTGAAGGTCTCTCCAATTCTTAGTTTTTTTGTCTTTGTCAGACCTAAGTCAAGTCTTAGTTGACATCTTCCCTACATACCTATGTGTGAGCCAAGTGTACAAAGCACGGTGAGATCTTACAGCCTTGAGTTTTGCAGTGTCCAAGGACTGGACTATTTGGCAGAGTTGCAGTTAGGATTTCAGGAGTGTTCATTTGTTTCAAGAACAGTTTGTCAAGTCCTGTTTGCAAGAATGTTGCTCCTTAGTTGAGGAAAAAGTCAAATCCAACAAGCTCAACTATGCCTTTCTTCAGGAATGAAATGGGGCGTCGCTGAAGTGGTGCTCATGTGGTTCTGCTGGGTGCAACAGGGTTCGCTGAGCTGGAGGGTGTTCAATTCAGCACCAGTAGACATGGCAGAATGCTTTGTACTCTATTTACATTGATCAGTGGCCTATTGACATAGCCCGTGTTTATCAAGCTTCCACATACCACTGGTTAGTGCTGCAAATGGAAGTGTGCTTTCTTCACTTGTGCTGAATGTTTTTACTACCTGGCTTTAGCAGCCACGCCCTAATGTACACATGCATTTTCATGTCAGCTGTACAGCAAGACCTTGTAAAAGCCTGCCACACTATTTTCATATGAAAAAGTACTCAAATAAAAAGTCTCAATGAACTTGTGTACCATTTGTTTAGCATGCATTTCAAAACTGGTGCAGGTTATTGAACATATCCCACCACACAACCATAGCCATGTTGACCAAGTTTATTAGATCCTTTGTAAAACATGTTGCAGACAGTACACGGTGTTCATCATAATCCACGAACACTCATTTTGATCTACAGTATATCGTCACACGGGTGGGAGGGTATGACTGGACACAACAGTATTAAACACACTTAACAGGAGTCAATTTATCAGGATTCTAACAAAGAATAGAAAGCTGCACTGCACCAAAAACAATGGTACCAGGTTAAATAAGATTAACAGTGAGTAAGCTGGGGACTAAACCCTGTCCTGTAAATTTAAATACACCATTTCAGTGAGTCATTTTAGGAGAAAACAGTTCTCTACGTTCAAGATTAGTAAAATCTTTGAGGACCAAAATAGAAAACACTTTCAAAATTGCTCACATTCAACAGGCCCTTCaacttaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20799 lncRNA downstream 3216 18384311 ~ 18387905 (-) True G17773
TU20797 lncRNA downstream 8241 18381496 ~ 18382880 (-) True xxylt1
TU20019 lncRNA downstream 209933 18180971 ~ 18181188 (-) True G17068
TU20018 lncRNA downstream 210871 18180042 ~ 18180250 (-) True G17067
TU20014 lncRNA downstream 213294 18177611 ~ 18177827 (-) True G17063
TU20893 lncRNA upstream 18265 18468782 ~ 18469768 (-) True G17865
TU20864 lncRNA upstream 37698 18488215 ~ 18488559 (-) True G17837
TU20921 lncRNA upstream 77793 18528310 ~ 18534746 (-) True G17890
TU20937 lncRNA upstream 105530 18556047 ~ 18557096 (-) True G17906
TU21035 lncRNA upstream 315542 18766059 ~ 18766711 (-) True G17999
XM_021574921.2 mRNA downstream 8044 18310688 ~ 18383077 (-) False xxylt1
XR_005039941.1 mRNA downstream 173411 18215104 ~ 18217710 (-) True LOC118944537
LOC110497564 mRNA downstream 292443 18089520 ~ 18098678 (-) False LOC110497564
XM_036958882.1 mRNA downstream 332519 18010504 ~ 18058602 (-) False LOC110497425
XR_005039108.1 mRNA upstream 62019 18512536 ~ 18516021 (-) True LOC110498635
XM_021575441.2 mRNA upstream 111922 18562439 ~ 18678437 (-) False LOC110498717
XM_021575515.2 mRNA upstream 111922 18562439 ~ 18678437 (-) False LOC110498717
XM_021575380.2 mRNA upstream 111922 18562439 ~ 18678438 (-) False LOC110498717
XM_036960119.1 mRNA upstream 113065 18563582 ~ 18678439 (-) False LOC110498717
TU19906 other downstream 296183 18089880 ~ 18094938 (-) False LOC110497564
TU19908 other downstream 296183 18089880 ~ 18094938 (-) False LOC110497564
TU19904 other downstream 296183 18093155 ~ 18094938 (-) True LOC110497564
TU18952 other downstream 1133880 17255236 ~ 17257241 (-) True G16161
TU18888 other downstream 1254764 17131803 ~ 17136357 (-) False G16100
TU21090 other upstream 426360 18876877 ~ 18885652 (-) True mydgf
TU21902 other upstream 1179976 19630493 ~ 19632617 (-) True LOC110502937
TU23634 other upstream 2348603 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 2634781 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 2634781 21085298 ~ 21089250 (-) False LOC118945319

Expression Profile