RNA id: XM_036960119.1


Basic Information

Item Value
RNA id XM_036960119.1
length 7167
RNA type mRNA
GC content 0.55
exon number 42
gene id LOC110498717
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 18562439 ~ 18678439 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAACTTTTTTTCACCGCGCGGAGCCTCGAGCTTGCGAGAGAAAGGAAGTAAGCAAGCTAGCAGCAAACCATATAATCATTATAGTCAACTCGCGAAGCCAGGCAGTAGACTTGAAATGATGTACgattaaatgtatttgaccaCATCAAGGTTACAGTATTTGGGTAAGATAGCCATTGAAAATAGGTatactacattgtagaaaaataacTTTGCGGCATGCTTCTAAACCGTTTTGTGATTAGCTACTATAAGCATATGTTTAGTGCTCGATTCTGAACGGCAACGTCCTTCGctatgctaacgttagctggaaGTATTTGGTTGGTTATCCAGTTTTGATTTCATCAGAAAGGGAACTACAAAATATTATTTCTGAATTGTCTATCAGTTGTATGCGGGAAATACAATAAGGAGTcatctcagacaatgagaaaaacAACTAAACAAGGTGCTGGGTGGTGAGAGAACAGCAGGCAGTGCAGACGGCATGCTTAGGTAACTCCACCTGGCCCAGAATGAGTGTCAAAGATGGCGAATGCGGAGCACCTAGCCAAGATGGACGGGCCTACAACCTGCAGGTCTACCCACGGCTCTCAGCGGACTGCCCATCTTGCTGCACTCTCAAGGTGCCCAAGGAGGCCACAGCCGCCTCCGTCACCCAGGACGCAGCCTTGGCCCTGGGCCTGGACCCCAAGCGGCTCTACGTGCTTGCCGAGGTGAAGGAGTGTGGCGGGGAGGAGTGGGTGCTGGAGTCCTGGGACCTCCCCGTCCAGAGGGTCCTGCTGTGGCCACGGAAGGCCCAGGAGCATCACCTTCAGAGCGAAGGTTTCTACTTCCTCCTCCAGGAGAGGAACCATGACGGCACCATCCACTACGTCCACCTCCCCGCTCTCTGCAAGGAGCAGGAGGCCCAGAAGCTAGCAGCCAGAGGCTTTCTCCCCCCACGCCATGATGACTTTGACGACCTGTGTAACCTTCCGTCACTCAATGAGAGCAGCATTCTGGATAACCTGCGCAACCGCTTCCACAAGAAAAAGATCTACACCTACGCCGGGTCTATCCTTATTGCCATCAACCCCTTCAAGTTCCTATCCATCTACAACCCCAAGTACGTCAAGATGTACGAGAACCACCAGCTGGGGAAACTAGAGCCGCACATCTTTGCCATTGCGGACGTGGCATACTACGCCATGCTAAGAAAGAGGGTAAACCAGTGCATTGTTATCTCTGGGGAGAGCGGCTCGGGGAAGACCCAGAGCACCAACTTCCTCATCCACTGTCTGACGGCCCTCAGCCAGAAGGGCTACGCCAGTGGGGTGGAGAGGACTATTCTAGGGGCTGGGCCTGTGCTGGAGGCATTTGGGAATGCCAAGACGGCTCACAACAACAACTCCAGCCGCTTTGGGAAGTTCATCCAGGTCAACTACCTGGagagtggggtggtgagaggAGCCATCGTGGAGAAGTATCTCCTGGAGAAGTCTCGTCTGGTCTCCAGAGAGAATAATGAGAGGAACTACCATGTGTTTTACTATCTGCTGGTGGGAGCGTCAGAGGAGGAGCGCAAGGAGTTCAAACTGCTGCAGCCTGAAGATTACCTCTACCTCAAGcagCAATATTTTAAGATCGAAGATGAGGAAGACCTGTGCCATGACTTTGAGAGGCTTCAGCAGGCCATGGAGATGGTCGGATTCCTGTCTGCTACTAAGAAACAGATCTTCTCTGTGCTGTCGGCCATCTTGTACCTGGGCAACGTGACGTACAGGAGGAAATCTACAGGCCGAGACGAGGGGCTGGACGTGGGGCCCCCGGAGGTCCTGGCTACCCTCTCAGACCTGCTCAAGGTGAAAGAGGAGTTGCTGGTGGAGGCGCTGACAAAGAGGAAAACGGTGACAGTCAATGACAAGCTGATTCTGCCCTACAGCCACAGTGAGgcCATCACAGCGAGAGACTCCATGGCCAAGTCTCTGTACAGCGCCCTGTTTGACTGGATTGTCCTGCGCATCAATCACGCACTGCTCAACAAGAAAGACATGGAGGAATCTGTCCCGtgtttgtctatagGGGTCCTAGATATATTTGGCTTTGAGGACTTTGAGACCAACAGTTTTGAGCAGTTTTGCATCAACTATGCCAACGAGCAGCTTCAGTATTACTTCAACCAGCATATCTTCAAACTAGAGCAGGAGGAGTACCAGGCGGAGGGCATCACCTGGCACAACATAGACTACACAGACAACGTGGGCTGCATCCACCTCATCAGCAAGAAGCCCACTGGACTCCTGTACCTATTGGACGAGGAGAGCAAtTTCCCCCGTGCAACTGACGAGACCCTGCTGGCCAAGTTCAAGCAGCAGCACCAGGGGAAGAAGTACTTTGTGCCCACACCTGTCATGGAGCCTGCCTTCGTCATCCGACACTTCGCTGGGAAGGTCAAGTACCAGATCAAGGACTTCCGGGAGAAGAACACGGACCACATGCGTCCAGACATCGTGGCTCTGCTGCGGAGCAGTGACCGGGCCTATGTGCGTCAGCTGATTGGGATGGACCCGGTGGCCATGTTCCGCTGGGGCATCCTGCGAGCCACCATCAGAGGCATGGCTTCCTTCAACGAGGCTGGACGCCGCTGGGCCGCCAAGAACGCAGGTGTGCAGCGCCCTACTTCCAGGACTCCTTTGGGGGAGCTGCAGAGGTCCAACACGCCTGTAGAGAGAATGTACAGGGACATGCATGCCCAGATAATCAGCTCCATTAAGGACTTGCAGCTGGACGGTGAGGACCCTCGCAAACTGCTGCAGTCCTGGGGTCGGCTGCGGTTCCCTCGACACCTCCTTCAgAAAAACAAGAATGCCAAGCAGAAACAGATCATACCTAAGAGCCTGTTGGACTCTCGCTCCCTGAAGTTCATTGTGGGTCGAACCTTCCACGACCGCACCGCCAAGTCTCTGCTGCACCtcaacaagaagaagaagactcCCAGCATTAGTGCTCAGTTCCAGACCTCTCTGACTAAACTGCTGGAGACTTTGGGCAGAGCAGAACCCTTCTTCATCCGCTGTATTCGCTCCAACTCTGAGAAGaagGAGATGTGTCTGAACGAGACCCTGGTGCTGCAGCAGCTGCACTACACCGGCATGCTAGAAACGGTTCGCATCCGGAGGTCTGGCTATGGAGCCAAGTACACATTCCAGGAATTCATTGAGCAATTCCGAGTATTGCTGCCCAAGAATGCTACCGCCTCCAAGCCAGAGGACATCTCGGCCCTGTTCCAGAGGATGGCGCTCGACCACACCACTTACCAGATAGGAAAAACCAAGGTttacctgaaggagctggagcgTCAGCAGCTGCAGGACACACTGCACAAGGACGTGATGCGTAAGATAATCTTCCTGCAGTACTGGTTCAGGGCCCGCCTGGAGAGGAGGTACTTCCTGGAGATGAGACAGGCGGCCATCTTGATCCAGCATGCGTGGCGTAGACGCCGTAAGGAACAGCAGTGTCAGGCAGCCACGCTGATCCAGGCTGTGTGGAAGGGCTCCAGACAGAGGTCCGAGTACCTCCGCAGGCATACCAGCATTATGAAGATCCAGGCTCTGGCTAGAGGACACTCCGCACGGAGGAGGTGCCATTCAAtacgggaggagaggaggaaaaaggaggaggaagacgaggaggCCAGGAAGAAAGAAGAGGAAGCCAGGAAGAGGGCGGAGGAAGAGGCAGCAAGGCAAGCAGAAGAGGCAGCCAGGCTAGCAAGAGAGGCAGAAGTGGAGGCAGCCCGACTGGAAATGGAAGCAGAGGAAGAAGCATttaggagaaagaaagaggctgTGCAGGAGGCAGTggaatggagggcgagggaggaggTAAGGCTGAGGCAAGCAGAACGTGTCAACAAGGAACCTGAGACACAGGAGGAGCCAGAGGCACAGGTGACAGCTGAAATAACTCTAGATGAGAGCCAACATGAGGATAAAGTGCCTGTCCAGAACAAGGAGaagcagagggaggagacagaagcTGTCGAGGCTGCAACTACTTCACCTCCTGAGGAGGTGGAAATGGGGGATGCTTCTACAGTCTTCCAGCCTGATGAGGGCAACGGTACACAGGCTGAGGTTGGGCctcagctggaggaggagagccAGGCTATGGAGGAACCGGAGGAAGCACActccgaggaggaggaggagacaaaggAGGAAGCTGCCCCCCAGTCACCAGAAAAAGACAATGGGGCTCAGGCTGCTGCGGAGGCACACAGGTCGCAGGTCTCCAGGAGCCAGGAGAAGAGAGAACAGCGGCGCCAGCGGGGCATGGAGCACAGCCAGCGGGAGAGTGAGCGGGTCGCCTTGGCAGCCACCAAGGAGGAGCCTGTCCCTAAGATCAAAGGTCAGGAGGCAGCAAGCCGAGCCGAGGTCAAGCCAAAAGAGCGGGCCGAGCGGGCAGACAGCAAGGAACTGGACCAGTACACCTTTGTAGCCTGGAAGAAAGAGGCCAAAGCCACATCCCACACCCCTGCACCTGTACGCCCCAGCACCTTACGCCTGAACCCCCCCGAACCAATGGATGACAGGAACGGCCATAATGAGGTCCTGGGTCCAGGCAATCTGGTTCGCTACAGCCAACAGGGCACCATGAAGGAGAAGGCAGAGAAATGGAAGGGGAAGAAGACTGATGGACGACAACCAGAGGGCAGCAGTCCTGACGACCACAGCAAGGACAGAAGGAAAAAACATTCACCGAGTGGTAGTAACTCTCTTGATGCGGTGTCCCCTGGCTCAGACAATTCTGGTGCCACTTCCAACAGAGAGCTCCAGTCTGCTGTAGAGGATTGGTCAAAGGGCAGCATGAAGAGGAGGACCCATGACACCTCAGGCCACCAGGACACTGTCCAAACTCTACCGCCCACCCCAGAGAGATCCTCAGGTTTCCTGAGGAAGATCCTGAAGAAACGTTCCCATAAAGAAGCTCATACTCCTGATGATGGAGACCTGAGCGACCGAGGAGAAGCCCTGCCTCTCTCACAAACATCCCGCTCCCACCCAGACCCTGCTAGTGGAGGCCGGGCAGTGAGCCAGAACCCCACCATCAAGATCAGCCGGGCCACGCATGTGTCAGAGCAATGGAACGCCTCTCTGGAGAGGGAGATTACCAATGCCAACGAGCTCCGACACCTGGACGAATTCCTGGGGAATCAGgtgaatGACTTCCGCTCCAGAGGGAAGCAGTTGTCTGCCACAGAAAACATCTTCATCACAGCCACCATGCAGTTCAGAGAGACCATCAAGGGCATGTACTCTCTCCCGACACACCATATTGGCTACAAGGGTCTGATGCGTGGCTACCAGAAGAGGGTAATCAGCCTGGCAGGAGAGAAGCAGAAGGGAGAGGTACAGCTGGTGGTCAACCTGTTCCAGTCAGTCCTGGACGGCTTCATCAGGGGAGAGATCAAAAAGGAGGAGGCAGAACCAGCCAAGCCTGCTAAAGCGCGGAAGAAGAGGCGGAAAAAATACAAGAACATGGAGAACCCCCTGGACCATGTGTTCAGCACGTACCAGGTTAACATCATGCAGTCGTGTGACCAGTGCAACTCCTATATCGGGGGCATGGAGAAAGTCTACATGTGCAGCTATTGTAAGATGGTGTGCCACAAGAAGTGCCTCTGCAAAATTGTCACAGACTGCTGCACGTTTTGTGCCAAAAAGAGTGACGAGGAGTCGGGAGGCCTGCACTTTGGGGTGCGCTTGTGTCACCTGACCAGTGAGGACAACCCCATTCCCATAGTGCTGGAGATGATGCTGGAGCATGTCGAGATGAACGGCCTGTTAACGGAGGGAATCTACCGCAAATCAGGCTCCGCCAACCGCATGAGGGAGCTCCACCAGCTAATGGAGACTGACCCCCACGCAGTGTGCCTGGAGAACTACCCCATCCACACAGTGACAGGGCTGATCAAACAGTGGCTGAGAAAGCTGCCTGACCCCCTCATGACCTTCACTCATTACAATGACTTCCTTCGGGCCGTGGAACTTCCTGAAAAGCAAGAGCAGCTACATGCCATCTACAAAGTGTTGGAACAGCTCCCCACCGCATGCTTCAACACCTTGGAAAGACTTTTCTTCCATCTAGTCAAAGTGTCTAAAGATGAGTCTCACAACCGCATGTCTCCCAACTCCCTGGCCATCGTGTTTGCCCCCTGCATCCTCCGCTGCCCAGACAGCGCTGACCCACTCATGAGCATGAAGGACGTGGCCAAGACCACCACGTGTGTGGAGATGTTGATCAACGAGCAAATCAGACGCTACAATGAGAAGTTGGAGGAGATCGAACAGCTGGAGCACGCTGAGGCGCTGGCCGTCAACCAGCTCAAACTCAAGAGACAGAACACGCTGCACTGGCATTTGCCCCTCAGGGTTTCTGCTCCTTACAAAGGAGTGGTGGTGCATGAGAAGAAGTGCTCTAACTTGACGGTGGTCCCTGAGAACGATGAGCCACTGGACTCTGACACGGAGGCTGAGAAAAACCTGATGGAGCGCATCAAGTCTATAAAACAAGAGAAGGAGGACCTGGCCTGCAGACTGCCAGAACTGGAGCAACCTGGTTCTGACCAGGACAACCTGGACTCTGAGGCATCGCTGAGCTCGGAGAGCCTGTTGGGCGAGCGCTGCAACAACTCGGAGCCCGAAGGTATGGACATGCTGGTGGTGCTGCATTTAAAGAGGTTGGCGGAGGTGCCGTCTGCTCTCTAGCAGGTTGGAGGCTCCCGGTTTACaagcaacgtGGAGAGGTGTTGTCCTGTTGAGTAAGGCCAAGCCGAACTGCCCTCCCAAGCCTTCTGACCTGGCCCAGAGACCTATGTCCCCAAGGGGGTGTTCCTCTTCCCCAAACCTCATCTCCGATGTTGCCTTTGGCTCCACCTCCCGGCTCCAGCTACCACGACGCCACCCCATCATCCCCGACACGGTGAAGCTGCCCCCGGGCATCCACTCGCACCCCCCCACTGTGGACCTCACCCCCCCTGCCAATGGGGGCTTCAGCCTGGTGAAGAGGCGGGAGCAGCCCGCCCGACGCAAAGACAGCATCCAGTCCCTGTACATCAGCCCAGACAAGGAcctgttcccctctcctccctccatctcttccctccccctttccAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20937 lncRNA downstream 6486 18556047 ~ 18557096 (-) True G17906
TU20921 lncRNA downstream 28836 18528310 ~ 18534746 (-) True G17890
TU20864 lncRNA downstream 75023 18488215 ~ 18488559 (-) True G17837
TU20893 lncRNA downstream 93814 18468782 ~ 18469768 (-) True G17865
TU20792 lncRNA downstream 172049 18390123 ~ 18391533 (-) False LOC110497762
TU21035 lncRNA upstream 87620 18766059 ~ 18766711 (-) True G17999
TU21076 lncRNA upstream 144213 18822652 ~ 18838680 (-) True G18033
TU21082 lncRNA upstream 150549 18828988 ~ 18830361 (-) True G18039
TU21085 lncRNA upstream 156233 18834672 ~ 18835532 (-) True G18042
TU21098 lncRNA upstream 167935 18846374 ~ 18882728 (-) True G18054
XR_005039108.1 mRNA downstream 47561 18512536 ~ 18516021 (-) True LOC110498635
XM_021574242.2 mRNA downstream 113065 18391121 ~ 18450517 (-) False LOC110497762
XM_021574151.2 mRNA downstream 113067 18391121 ~ 18450515 (-) False LOC110497762
XM_021574921.2 mRNA downstream 180505 18310688 ~ 18383077 (-) False xxylt1
XR_005039941.1 mRNA downstream 345872 18215104 ~ 18217710 (-) True LOC118944537
XR_005039187.1 mRNA upstream 11822 18690261 ~ 18692032 (-) True LOC118943879
XM_036960783.1 mRNA upstream 89845 18768284 ~ 18815021 (-) False LOC110499356
XM_021576482.2 mRNA upstream 89845 18768284 ~ 18825716 (-) False LOC110499356
XR_005039242.1 mRNA upstream 89845 18768284 ~ 18825716 (-) True LOC110499356
LOC110531991 mRNA upstream 155723 18834162 ~ 18841489 (-) True LOC110531991
TU20791 other downstream 168722 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 172049 18390123 ~ 18391533 (-) False LOC110497762
TU19906 other downstream 468644 18089880 ~ 18094938 (-) False LOC110497564
TU21090 other upstream 198438 18876877 ~ 18885652 (-) True mydgf
TU21902 other upstream 952054 19630493 ~ 19632617 (-) True LOC110502937
TU23634 other upstream 2120681 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 2406859 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 2406859 21085298 ~ 21089250 (-) False LOC118945319

Expression Profile