RNA id: XM_021592266.2


Basic Information

Item Value
RNA id XM_021592266.2
length 2195
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110511247
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 23805014 ~ 23822354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttcaatgaCGTCAAGTATCAGCTGACTGGTTTGTTTTGCTGTAGACTCCGCAGCAGATAGCAAGGAAGGAGTCGAACGACATCAAAGGAGTAAAATAATTTGTTATTCTTACAAAAAATTGGTCTTGGATCGCCCAACAGTTTAAATCATCTACGGTTGAAAATATATGTACCATTCTTACAGGCATCTTTTGCCTCATTTACGAAACAGTTTGACCTGCGTGAAATATGCCTTCAGAGAAGACATTCAAACAAAGGAGGACATTTGAGCAGAGAGTAGATGATGTACGACTGATCCGAGAGCAGCACCCCAACAAGATTCCGGTCATCATTGAGAGATACAAGGGAGAGAAGCAGCTGCCCATCCTGGATAAAACCAAGTTCCTGGTTCCTGACCATGTCAACATGAGTGAACTGATCAAAATCATCAGGAGGCGCCTCCAGCTGAACTCCAACCAGGCCTTTTTCCTGCTGGTGAACGGCCACAGCATGGTGTCCGTGTCGGCAGCCATCGCTGAGGTATACGAGCGCGAGAAGGATGACGATGGCTTCCTCTACATGGTGTACGCCTCGCAGGAGACCTTCGGAACCATGGCCCCCCAGTAACAGCCTCCCACCACCACGCCAGCACTCGGGACATTGATACTATCtaccacccccccacccacctgaTCCTTCGTTCCTAAATACAGACCTATCCCCCTGTCTTCCCTCCAACCCATGCTTGCTTTACAACCTTAGCCAAGACCATAGGAACCAGCCAACCTCTTCTCCCATGCGCTAAAGGGCCCCTTATAGTTATTAAAAGCCCTATCCTGCACCTTCTCATACTCTGCCCCTTACCCATACATTCAGCCATGTGTTTAGGGAAAGGGATTAAATAGTTTGTTTGGGTTTTGTTGTATAGGATGGATTAGTATAGCAGAGATGATTGCCAGTTCAGCTTGAGTTCGCTCGCACAAGTTTCAAACGTTACATGTTAAATCCCTGCTTGAGTCCATCACGGTTGAGTTCAGATACAGCAAACCCCATCTTTTCTTTTCCACTGGTTGGGTTTGCTAAACTTGAATGAGCTCAGTCTTTTGGATGAAGCTTCAATCACAACAGCTGCTGAGGAATTTTGTAACAGTTTAGTTGAATCCAGTTTGACTGACATGGGACATTACTGCCACAACATGTGTCATCATGTGGTAAAGTCTCCTGTGATGGGTGACTTAGGCCAATAGTCTTAACCGCTGTGACAAAATTACTGTTTCTATTTCCTTTTTAGTCTTTACTTTGGCCAATTCTAggcaaactatagtttttaagGCTTACATGTTAATGTGTGTTCAGTTTAGCATTCACCTCCCCCTGTCTTTATAATGGTTATGGGTTCAGCGATAAGTACAATTCTCTCCTTAATGAAAACGAAGGTCCTTtttcaaatatgtttttatttcccTGCCTTTGTCGTAAATGTCTCCACATAGAAGAGATGTGAGGGactcttgtttaaaaaaaaagaagttttttttaaaatgcTATGCTACCGAAAATCTGCTTTGATGATTGTAATAAGAGATTTGCCTCTGTGTGTGTACAGATATTGGACAAATGAAAGGAATAATAAACTGACCTTGATCACTATGATAGGACATGATGATGGAATTGCACGTGTGTTGAAAGGGTCACTGATGTGGGGTTGGTGGCCAGTTAGGACTGGGCGGGCATCATGGGCTGGGTCTGTCCATCTCTCCCCCACCTAGACCTGCCCTAGGGCTCCGGACAGAGCTCATCTCTGGGTGGCATCACACTTTTAGAATATTCAATTTGTTTAATAGAGGGTTATTTACGCCTTTATAATGTGTGATGACTTGTGTCCTCTTCCCTTTTGCTGTCCTCAACTGTTTAAAATGTTAGATGCCTTTTTATGTCAGCATTTTTGGCAGTTCCATCTTTATTTTGTTTTCATTCAATGTGATTTTGCTTCGCTGTACAAATGTCCATATGCTATACTTGTGCATAATGAATAAGAATGATTCTATGATCAGTTTGATTGAGGGTTTAATAACAGAGGAATGGTACAGTTATCAACCCAATGTTCCTCTGCATTCTCCTGTGTTTGCCACTCATTCTTCATATTTACAGCAGTATTACAACCTTTTCTTGTATTTATGTTCATATtttatgaataaaaaaaaaatgtaaacgtt

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0005829 cytosol cellular_component

KEGG:

id description
K10435 MAP1LC; microtubule-associated protein 1 light chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27196 lncRNA upstream 4604 23799950 ~ 23800410 (+) True G23580
TU27186 lncRNA upstream 11635 23787802 ~ 23793379 (+) False LOC110511054
TU27188 lncRNA upstream 12344 23787802 ~ 23792670 (+) False LOC110511054
TU27190 lncRNA upstream 12344 23787802 ~ 23792670 (+) True LOC110511054
TU27179 lncRNA upstream 23173 23781559 ~ 23781841 (+) True G23568
TU27210 lncRNA downstream 6040 23828394 ~ 23828945 (+) True G23592
TU27212 lncRNA downstream 7429 23829783 ~ 23830014 (+) True G23594
TU27215 lncRNA downstream 9602 23831956 ~ 23832268 (+) True G23597
TU27217 lncRNA downstream 13806 23836160 ~ 23836387 (+) True G23599
TU27221 lncRNA downstream 17913 23840267 ~ 23840488 (+) True G23602
XR_002471667.2 mRNA upstream 13455 23787493 ~ 23791559 (+) False LOC110511054
XM_036971767.1 mRNA upstream 935635 22713674 ~ 22869379 (+) False LOC110510174
XM_021592337.2 mRNA downstream 50560 23872914 ~ 23905175 (+) False LOC110511358
XM_021592384.2 mRNA downstream 50561 23872915 ~ 23905175 (+) False LOC110511358
XM_021592826.2 mRNA downstream 263315 24085669 ~ 24091336 (+) True LOC110512398
XM_021592905.2 mRNA downstream 282992 24105346 ~ 24114557 (+) False LOC110512529
XM_021592933.2 mRNA downstream 282992 24105346 ~ 24114557 (+) False LOC110512529
TU26735 other upstream 230019 23574592 ~ 23574995 (+) True G23135
TU26709 other upstream 266151 23538396 ~ 23538863 (+) True G23109
TU24207 other upstream 2236826 21567545 ~ 21568188 (+) True G20773
TU22579 other upstream 3495116 20309425 ~ 20309898 (+) False G19400
TU22556 other upstream 3528119 20276590 ~ 20276895 (+) True G19380
TU27205 other downstream 50667 23873021 ~ 23899805 (+) False LOC110511358
TU27206 other downstream 50667 23873021 ~ 23899805 (+) True LOC110511358
TU27861 other downstream 682301 24504655 ~ 24506116 (+) True ccl4
TU27821 other downstream 728171 24550525 ~ 24552435 (+) True G24123
TU28011 other downstream 1017631 24839985 ~ 24840462 (+) True G24295

Expression Profile