RNA id: XM_021593400.2


Basic Information

Item Value
RNA id XM_021593400.2
length 2746
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC110513605
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24297698 ~ 24343156 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAATCTCTGTCCTCTGCTCACACTGCGTTCGTCTGACTTGGTAGCCTGGGGCGAGCCAGACATGCGCCTTCATTGGATTTCTAAAAGATAAACAGACAATTAGGAcaatattttaatttaatttgattaagaatatatatagactactgtatatTCCCTATTCACACGCGTTACATTGTTAATCCGAGTATGCGCACTGAACGCCTCCATTGTCTACCAGCAGCAAGGAGTGAGAGCGAGCGCGCGGATATGAGAATGCAGGGGAGCGGCATACATTGACCCAAATCTCCGGGAACCGGAGAACAAGCGGACCCGGACACACGTATGTCGTTGGAaagacagactggcagacagacagcaacAGTTGTCATGGATATGGTTATGATCAGCTGAACCAGTCTTCAAGACAAAATAATAACATTAAAGGGGGGTAGCCTAGCCTACTGCAGGGAAGCGCGACTGTCGGAACCGTTGTTGCGCTTTGTGCTTGTCATCATCCCTGTTGTGATTTGGAGCAGGCTGTCCTGTCATTCGTTGTGAGGGGAAAACGTTTTGCGTTTTGCTTATCTTCATCAAAGGGAGTTGTTTTTCTGTCATTCATTTGACATCATCCTCCTATAAATGatcatttttctctgttgagctGAATCAAAACATTCGAGTCGCTCATGTTCCTGTCAGGGAAATGGGCTGTTGCGTCTGTTATACACAGCTGCTTTAGTCAGACTTGACAACCGGGATTTTTTAAAGCTGCCGTTTTGTCCCTGGCAAGAGGCGATCAAGTGCACTGCAGACAGGCGTGTCGGGGGCGATTCCAGTGACGGCTCTCGACTCTCTGCGGAGCCCCGTTTCAACAGCCCCCACCCAATTTTATCGGGCGATTTGGATGGGGGGCAAGCAGAGTACGGCAGGGCGGCCCCGGGGTGCTTTTCACGGTGTCTCGGCGGATGACAGCGCAGTGGCACCCTCGGCCCACTTTGGGCACTACCGACCAAGTGGCACTATGGGGTTACGCAGCCGCTCAGTGAGTTCTGTGGCTGGGATGGGCATAGAACATAGTCCTACGGTGCCCTTTGGTTTTTATACCCCCAGAGGAACAGACTCGGACAGGGCTGGAGGGGGGTCTGGCACTAACGCCACCCATGGTAACGGCTACCAGGAAACGGGCAGCGGGCATCACACGGATGGTATGCTCTATCTGGGCTCCCGAGGGTCGTTGGCAGACACCTTGCCCCTGCACATTGCACCCCGGTGGTTTAGCGCCCACAGTGgGTTCAAATGTCCTGTCTGCTCCAAGTCTGTGGCGTCTAATGAGATGGAGGTGCACTTCATCATGTGTCTAAGCAAGCCCCGCCTGTCCTACAACGatgACGTGCTGGCCAGGGATGCCGGGGAGTGTGTAATCTGTCTGGAGGAGCTGCAGCAAGGAAACACCATCGCCAGACTGCCGTGCCTCTGCATCTATCACAAAAGCTGTATAGACTCCTGGTTTGAGATCAATCGTTCCTGCCCTGAGCATCCTTCAGACTGACTGACCTCTGTGCTCCTACTCCTACTGTTCAAGGACACTTTATGTTCCTATCATGGATATCTGGACactgaagtaaccaaaaaaactAAACAATCAAAACAACCTATCTATCAATtgatctatcaatctatcaagaGAATTCCTAGCAAACGGAACCAAAAGAAAAAACATTAAGCTTATACTTTCACTTCCACATGCATAAAAGAGTGCCCCTCCTCCCTGCCACCTCCCCCCTAGCCCTAAAGGCTGCTAACTGCCAGTCCCTATGTTGGCCCAACTAGGCTGACCATCCCTCCAGGCCAACTGCCTCACCAGGCTGCTTGGCcccccagccagccagtcaccacGCCACACGGCCTGGTCCTCTCTGGGCTCCTCCGGGGGTCTGGCCCTTGCTCTGCTCTGCCTTCCATTTTGCCTCCTGAGTTTGTCCCTGCCTGGCTCCATATCACTCATCTGGATCCAGCCATCTCATGGCCTTCAtcaggaagagacagaggaggataATGAAGAAAAAGATGAAGAATAGGGCTGGATGAACCCTGTGTGCCAGGGCAGGGTCGACTCCCAGGGCGTTGTCTGGTAATGCAACAAAAGGCTTTCCCCCAATCCCCAGAGTTACAgcacccacccacccaatcaTTAGTTGAAGAGACATGCGCTTGTCTTAGTCTTTACTTTGAGGTGGAGCAGCGATGTGTGAAGTGCAGCATTGGTGTGGCAGGCAGGGTCTGTCTATGTAGGTTTCTGTttgggttatgtgtgtgtgtgtgtgtgtggaggggtgtagATAATGCTTCTATATGTGTCGGGGCAGTGAAAATATCAGTCAGACTACACCTGTTCTGTGTGCGTTAGTGTGTGGAGGGGTACGTCGTTTATGCTTGGTGGTgggtgaatgtgtgtgagtgtgcttatGTGTCGTGGGGGACTGTTGGGGGTCGTTGGTTTATGTTTTTCTATGTTCTGGGGCTGTGAGGATGACGTCCGTAAGCATACATGTGGTGTGGTTGAGGTTGGGGTGATGATGCAGCCATCTCTGTAGTGTGAGAGCCTGATTTGCTAAAGGGTCAAATAGAAGTCTGAGACAATACTATGTGTtggtctgtgtttgaaatgtttacaatttAGATGTCCATTTTCCCTGTGTGAATGTGGTATCGCTCCCTTTATTTTGCTAATGTTTACAGTTACATAAACTCGACATGACATA

Function

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0005764 lysosome cellular_component
GO:0005768 endosome cellular_component
GO:0016020 membrane cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10694 ZNRF1_2; E3 ubiquitin-protein ligase ZNRF1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28300 lncRNA downstream 65829 24228039 ~ 24231869 (-) False G24541
TU28293 lncRNA downstream 65829 24228113 ~ 24231869 (-) False G24541
TU28299 lncRNA downstream 65829 24228113 ~ 24231869 (-) False G24541
TU28301 lncRNA downstream 65829 24228113 ~ 24231869 (-) True G24541
TU28316 lncRNA downstream 119196 24170333 ~ 24178502 (-) True G24550
TU28449 lncRNA upstream 71946 24415102 ~ 24415964 (-) True G24670
TU28451 lncRNA upstream 73797 24416953 ~ 24417509 (-) True G24672
TU28454 lncRNA upstream 83167 24426323 ~ 24426650 (-) True G24675
TU28458 lncRNA upstream 97666 24440822 ~ 24441043 (-) True G24679
TU28459 lncRNA upstream 98436 24441592 ~ 24441837 (-) True G24680
XM_021593323.2 mRNA downstream 9522 24233216 ~ 24288176 (-) True LOC110513500
XM_021593038.2 mRNA downstream 171070 24119224 ~ 24126628 (-) True ccdc113
XM_036973051.1 mRNA downstream 194774 24091604 ~ 24102924 (-) False LOC118948024
XM_021592634.2 mRNA downstream 225288 24050309 ~ 24072410 (-) True uba2
XM_021592683.2 mRNA downstream 248265 24034225 ~ 24049433 (-) True LOC110512077
XM_021593578.2 mRNA upstream 64889 24408045 ~ 24410610 (-) True LOC110513914
XM_021594017.2 mRNA upstream 209236 24552392 ~ 24554074 (-) False LOC110514811
NM_001165110.1 mRNA upstream 252929 24596085 ~ 24602378 (-) False ciapin1
XM_036946489.1 mRNA upstream 252931 24596087 ~ 24602486 (-) False ciapin1
XM_021558348.2 mRNA upstream 252931 24596087 ~ 24611486 (-) False ciapin1
TU28304 other downstream 71208 24222907 ~ 24226490 (-) True G24542
TU27396 other downstream 471207 23822700 ~ 23826491 (-) True LOC110511130
TU26999 other downstream 673349 23624026 ~ 23624349 (-) True G23394
TU25921 other downstream 1454393 22839845 ~ 22843305 (-) True G22350
TU25520 other downstream 1915490 22381870 ~ 22382208 (-) True G21993
TU28501 other upstream 209435 24552591 ~ 24553562 (-) True LOC110514811
TU28721 other upstream 520931 24864087 ~ 24864834 (-) True znf276
TU28795 other upstream 585192 24928348 ~ 24938701 (-) False LOC118956210
TU28762 other upstream 601752 24944908 ~ 24951387 (-) False LOC110518671
TU28960 other upstream 937436 25280592 ~ 25281030 (-) True G25115

Expression Profile