RNA id: TU43101


Basic Information

Item Value
RNA id TU43101
length 2547
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC110522154
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35892507 ~ 35914512 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtgtgtgtgagagagagagagagagagagagaacctcatATATTGTTAGACCCAACTGACCCAGGTGGAAATGAAACAGACTTCTAGAGCCATAGTAGTTTCTCATCTCTGTGACAACCCTAACACACACAGCATGACACATTGTTGTTGCTCTGGATGAGAGAACCACAGAGATGAACTACTATCAACCCAGGAGCTGTCTGTCACTAAACAAACTCCCACTGTTGTCCACCAGACACTCCTttagccctcctcctctccgttTTAGGAAAGTGTTTCATTCTCTAAGCATCCTTTTGTACCTTGTGGCATGATCCAGAAGTTAAGTTGTGTAGTGCTTTGTTGAGCTTATTTGCTGTAGAAATATAGAAAAGACACCTCATGTGTGATGGATGGGTCTAGATGTCAGCGGTGTCCAGTCGTATCCACTGAGGGCCAGTGCATGACCAGGCTTCATTCCACCCAAGCACTAACACACCTTTATGGAAGActatgattagttgaatcaggtgtgttggttGGTACAGGAGCCACATCACTGGCCCTCTGTAGATAAAACTGGACTGATCTAGGGGTTGGATTGGGTTGTTGTGTGGGACTGGGCTGGGAGGTGTTGAGGGGTACCTGGGGACTTGTGGGGTGTAGGGGAATTTTGCCTATTGCTTGTGTTCAACTATAATAGGTATTTGACTTGCGTAGTGCTAGTTAATGTGCCAGATGGTGAATCCTATTATAATCTATGGTTTTATTCCTTCTATAGCAAGCTAGTTTCAAATCGAATTGTCCTGTAAAGGTGAAGCATTTAGTTTTAATTAgatttgtttttttcttctcctgATTTGAATCTGATCCTCCAAAGGCATGTTGCATCTCTGTATCCTTTCTCTTATGCAAATGGTCTCTTCTGTCTGCACTGTCAGTGTGCAAGTGAACTTATCTAGCCTGGGTGTCTGGCTGTTTCTGCTGTGGCCAACTCCTTTGTTCACTGTTGTGACATCATGTTGGGCTTAAGCAGAAACACACTGTCTGGCACCCAGGCTAGATGAGTACAGCTACATACCCAGACTGGCAAGCAGTGTTTTGGGTTTTTCAAACTTTGATCTCTAACTCAGCAGCACCACAGTGGGAGTGCTCCAGGATTCTCCTCTCCTACTATTGTGTTCATGGAGAGGTTGGTCAAGGCTCATCAACCTACACAGGGTGTCCCATTCatgccacagtacagtacatgggCCCAATCATATCGCCCGGATTGGTGTGCTTAATCCTATGATATTCTATAGGGCACATTGTATATGAGACTTTCAGATAGAAATGCAATGTGAATGGGTGTCTGTTCCACACAATAGAGGATATTGTCCATTCTGTACATGACAGATCTACCTATGATTTTCTAAACATTGTGCATCAATTCAATATGCTACTAGTGACATGTACAGTAACTGAAAAGGGTTGAGGTCCTAAACTTTAGGAGCCGGGTGTATATTACTGCCATAATAATGTGGACCCTTTGCTCAAAGCAGATGTCGTAATGCTTCAAAACACTGCCGTAATACTGCCGTAAAGCCTGTTACAGGGGGGTGTACTGGCCTCTTGTCCCAGGTCACATAAGACGAGATGTCATCTGTATTTCTTTAAGAAAACTCATCATAGCTTTCATTGGGGACATCCTAGTCGTACACAAGAATTGAATCACAATTGATTTAATCCCTTTGTTTTCATTTTCACAAAATGCAACAACTGTCAAATGTataataatatagttaacatAATTTTAAGTATTAGGGTGCAGGGTGACGTTACAGATGACAGAACAGGCCCCACACCACAGTCCCACATGATGGTGAAGCTATTGTTTATATTTGTCTGTAATTTGTCTTTTGCCTCCATTAAACTAAGAACAGGAGAGTCGATGAGACAGGAAAATTGCATTTCTTTGAGAAATTATTGCATTGAAAAACATGCACTGTCTGTACTGACATGGGAAAGCCTCAGCTTTGAGATGATTCGAGTTAGCATTAGCATCCTAATACATTATGAGTGTAGTTTTAGCATTATGCCAACTGCGTCTCAATAACATGGGCACCAGACACTGTGGTGTATTGTAATGGTTACCACAAGAGAACAGCCATAGTGTGTAACTATGTCGGCTATTAGCAAATTGAGCATAATTTGAGGGAAAACATGTATTCTACACATTCAACTTGGCACAAAAGCAGAACAACAAACATCTGAAGAAAATACATAATGTCTGCTCTCACTGTTTGATGAGTTGCAAACTTGTTGGAAGCAACAATCAGTGAGTGGACAGGACCCTTTCCCTTTAGCTATTTAGCGTCAGGACACATTAGTCATTACAGTATGTGTATTCACTCCCTTTCAATAatgagagatatactgtatttgaAGTGTTATTTGTTTTAATCCTTTAAGGATGTAGAAGACCAGAAATTCCCACATTTTTAAAGGCAAATAAGTTAATGAATAAATGTGCTTCCCTTGTaactttaataaataaataaacaaaaatatgaaaAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43138 lncRNA downstream 851 35888587 ~ 35891659 (-) True G38139
TU43124 lncRNA downstream 29048 35862825 ~ 35863462 (-) True G38126
TU43050 lncRNA downstream 150007 35742286 ~ 35742503 (-) True G38059
TU43041 lncRNA downstream 157521 35734776 ~ 35734989 (-) True G38050
TU43040 lncRNA downstream 159830 35732342 ~ 35732680 (-) True G38049
TU43150 lncRNA upstream 42708 35942360 ~ 35942604 (-) True G38147
TU43117 lncRNA upstream 43034 35942686 ~ 35943267 (-) True G38119
TU43145 lncRNA upstream 105401 36005053 ~ 36045196 (-) True LOC110522092
TU43241 lncRNA upstream 206952 36106604 ~ 36107897 (-) True G38224
TU43246 lncRNA upstream 208746 36108398 ~ 36108872 (-) True G38229
XM_021600041.2 mRNA downstream 139162 35750305 ~ 35753348 (-) True LOC110521997
XM_036976657.1 mRNA downstream 142911 35742650 ~ 35749599 (-) True LOC110522006
XM_036976665.1 mRNA downstream 142912 35742650 ~ 35749598 (-) False LOC110522006
XM_021600087.2 mRNA downstream 142925 35742650 ~ 35749585 (-) False LOC110522006
XM_021600080.2 mRNA downstream 142932 35742650 ~ 35749578 (-) False LOC110522006
XM_036976727.1 mRNA upstream 40090 35939742 ~ 35961413 (-) True cax2
XM_021600276.2 mRNA upstream 71679 35971331 ~ 35982648 (-) False armc10
XM_021600283.2 mRNA upstream 73751 35973403 ~ 35982887 (-) True armc10
XM_021600198.2 mRNA upstream 105850 36005502 ~ 36032179 (-) False LOC110522092
XR_002473256.2 mRNA upstream 106417 36006069 ~ 36032178 (-) False LOC110522092
TU43028 other downstream 170454 35721440 ~ 35722056 (-) True G38045
TU42957 other downstream 308902 35583292 ~ 35583608 (-) True G37976
TU42883 other downstream 451182 35440918 ~ 35441328 (-) True G37907
TU42180 other downstream 614505 35273709 ~ 35278005 (-) True G37310
TU40907 other downstream 1511278 34341562 ~ 34381232 (-) True G36196
TU43851 other upstream 470442 36370094 ~ 36409019 (-) True LOC110522187
TU43930 other upstream 608886 36508538 ~ 36510829 (-) True G38855
TU45214 other upstream 1816888 37716540 ~ 37717033 (-) True G40079
TU45886 other upstream 2225628 38125280 ~ 38125725 (-) True G40732
TU45924 other upstream 2287836 38187488 ~ 38191736 (-) True G40768

Expression Profile