RNA id: XM_021603973.2


Basic Information

Item Value
RNA id XM_021603973.2
length 2244
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110524381
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 49098552 ~ 49104735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACTTTGCTTGTTGTGTCTACACTACGTTGCGCCGCTTTCCGCACCGGGCGTGGGTCCGTTTCATGCGTGTAGGCACAGACACAAATGCAGAGAGCGCCACCAACGAGAGCTCTCCGCTGCCCACTGTGAAGTTAAAATGGGTATCGAAAAGGAGAATTACGAGACGAGTATTATCATGGACGAGGACGAGTTCAACAGATCAATAGAACCGATTTTGTCGAAGAAAGACAAAGTTTACGCGGCGATCCCAGACCGAGATCCCAATGACATAAATGCGCACTTAAAGGTTGATTTTGACGATGTGATCGCAGAGCCCAGTTCCAGCCACAGCTTCGACAGAGTATGGATAGGAAGTCACGCCGTCTTCGAACTGTTCAAATATGTATTCTACCGAATACTGACCACCATCCTCGCCGTTCCCATGGCATTTATCATCGGGATAGTCTTCGGGGTCCTCAGCTGTATTCATATTTGGGTGTTGATGCCGGTGGTGCGGAGCTGTCTGATGGCCCTGCCCTCTGTCCAGGTGGTCTGGAGCAGCCTTACAGACATTTTTGTCACCCCCCTCTTCCACAGTATGGGCAGGTGTCTGTCCTCTGTCCACGTCAAGGCCATGGACATCTGATAGAGTATTTTCTTCCCTGTTATGGGGGTTAAGAAGTTAATTAAAGGACatcttcactttttttttttttttttacctatgtCTAAGTGGAAAAACAAGTAAATAATTTGAGGTAACTCTTAAAAAAGTGAAGATGTCATTGACCTATGTTTGCGTTGAAATATAGAAGTTCTTTATAAAGCCAACATCGACACACCGTGTGGTGGAATTATGGTAGAGCATATAAGTGCAACTGATAAGTTACGAGCGCTCATAAAGGGTGATTAGGGTCAACTTCCCTTTGACAACGCCACAGCACCACCTGAGTAATAAGATGATCCAACATGATAATTTATGTCATTTGGGAATTTCAAGATTCTCATGATAAGTCATAATGTCCACTGTTCATAGAAGTGGTTGTGTGGCATTTCTAAGCAGTTTTGATGTATTCTGCCAAAATGACAATTGCTCAGTTGTGACCAAAAATAAATGATTGTCATTCCATTATTTTGATGCTAAAAATAACTGTTTTAATCATAAAAGATCAGATCAGGGCCAAACAGTATATTAGCCAGTTAGGCATCACACCATTCCTGGCATCAGACATGTAACATCTGTGTAGTTTCTGCTTTTTATGTGTTGTGGATATACAGCAGAGGATTCAGATGGGATTTGAATGAATTCATTTGTTTTCTGTAAGAGAGTGTACACTGATCCTAGATGCTGAGATGCAGCTTATACTTCTGCAGCCTTATTTTGCTGCTGCTGTGTTAATCTCGCAGTGCTTTGGATACATTTTGGCCATTTGCTTTTACACAAAGACAACCTACCTAGTAAAGACCTAAGACAGTTGTATATATTTTGAACAGAAGCTGGACTTTTACGTGTCTAATATAATAAACAAAAGGGTGGGTTGTCGGAGTGTTGGCTTTCTAACTAATTATTCATGCACAATTGCCATGTGTTCTTGACGGTCCATGTTTCTGTGAGTCGTGATAAAACTGGACAGAACTTTTATGTTAAGTATCTAAGATGAGTTTTACTACTCTGGTTTATTCTATACAGTCAGGTACATGGTCGTAGGCCTAGGTGCTGCTGAGCTTTCTATAAGCCGTAGAGCAACTAGCTTGCTTTATTCTTTGATGTCAGAACCCAAATGTGGAGATATTCTAGCAGATAGTGCCACCAGTTCTTCACAACTTACCGTATAATACGTCACACAAAACCTTGGcttcatccaaaatggcaccctattccctaaaaagTAGTGGGCTGTATAGGGTATGGGGTGTCATTTCAGAGGCACCCTTGTGCTTTGTTTTAATGGACAACCAAACGCAGCGATTCTGACAGTAACTTATAATCGTTTTGCTAAGCTAGGCAGTTGACAGCCTGCCATCCAATAGACCATGTCTGTACTTGGCTGAGTTATCTCTTCAGTGCTGAGAGGAAATTGGAGGTGTGATTGTGCAATAGAGCACACAGGTgtggaattattattttttatggagcaaaaatggaaaatggcatGATGTGATTCTAAATGAGCTCAACAAACGAGACTTAttctttgattttttttaaagtaccaAAAGTGTTCTTATTCTGCATCAAATAAAGATaattatttgtaaaaaa

Function

GO:

id name namespace
GO:0000139 Golgi membrane cellular_component
GO:0005901 caveola cellular_component

KEGG:

id description
K12958 CAV2; caveolin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59154 lncRNA downstream 497137 48497012 ~ 48601415 (-) True G52974
TU59188 lncRNA downstream 540650 48555819 ~ 48557902 (-) True G53008
TU59132 lncRNA downstream 588074 48469168 ~ 48510478 (-) True G52956
TU59165 lncRNA downstream 592461 48505510 ~ 48506091 (-) True G52985
TU59152 lncRNA downstream 598925 48495624 ~ 48499627 (-) False G52973
TU59745 lncRNA upstream 8278 49113013 ~ 49113261 (-) True G53524
TU59763 lncRNA upstream 29206 49133941 ~ 49134182 (-) True G53540
TU59764 lncRNA upstream 29861 49134596 ~ 49135356 (-) True G53541
TU59788 lncRNA upstream 65437 49170172 ~ 49170575 (-) True G53565
TU59759 lncRNA upstream 73114 49177849 ~ 49202748 (-) True G53537
XM_021603952.2 mRNA downstream 17838 49067489 ~ 49080714 (-) True LOC110524368
XM_021603960.2 mRNA downstream 18659 49067489 ~ 49079893 (-) False LOC110524368
XM_036979352.1 mRNA downstream 54295 48971580 ~ 49044257 (-) False LOC110532382
XM_036979340.1 mRNA downstream 140491 48901602 ~ 48958061 (-) True LOC110524359
XM_036979294.1 mRNA downstream 206065 48814805 ~ 48892487 (-) True LOC110524343
XM_036979383.1 mRNA upstream 75397 49180132 ~ 49208517 (-) True LOC110524388
NM_001165141.2 mRNA upstream 119977 49224712 ~ 49228631 (-) True cbpa1
LOC110532387 mRNA upstream 659260 49763995 ~ 49822972 (-) True LOC110532387
XM_036979394.1 mRNA upstream 743643 49848378 ~ 49876492 (-) True LOC110524413
XM_021604073.2 mRNA upstream 1155669 50260404 ~ 50270301 (-) True LOC110524441
TU59630 other downstream 112635 48984185 ~ 48985917 (-) True LOC110532382
TU59011 other downstream 794416 48294108 ~ 48304136 (-) True LOC110524264
TU57798 other downstream 1537343 47542376 ~ 47561209 (-) True LOC110524104
TU57725 other downstream 1720009 47377641 ~ 47378543 (-) True G51649
TU57327 other downstream 1808871 47288939 ~ 47289681 (-) True G51285
TU61709 other upstream 1306899 50411634 ~ 50412128 (-) True G55408
TU61943 other upstream 1660628 50765363 ~ 50767431 (-) True G55627
TU61953 other upstream 1673012 50777747 ~ 50783844 (-) False LOC110524514
TU61955 other upstream 1673012 50777747 ~ 50792069 (-) False LOC110524514
TU61958 other upstream 1673012 50777747 ~ 50783844 (-) True LOC110524514

Expression Profile