RNA id: XM_036979692.1


Basic Information

Item Value
RNA id XM_036979692.1
length 6556
RNA type mRNA
GC content 0.51
exon number 31
gene id LOC110524680
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 52333895 ~ 52448300 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGAACggatgagatagagagagcgagaggaggagaggaccagTCAAGCAGCAGAGGCAAGTGGAAGCTCAACGGACGGACGCGGTTCCAACTAAAAATACACACCGGGGAAAAATAGCACTCTACTGCAAGGACCTGGAAGAAAGAGCGCACCTCAGACTGCAGATTGAAGAAGAACAGACAGGAGTGTTGAGCCTCGAACAGGAGATTGGAGTGGATCGGGTCTTCTCTGttgtgaATGTGCACGTGGCCGAGGGGTTCTGattgaggggagaggggggacttATCTCTGTCTGGGGGAGGACCTTTGCATCAGACAACCAATCATGGAGAGGACGAGGGCGAGAGCAACAGTGTTCCTGATGCTGTTCCTGGGTAACCTCGGCAACGCTCTGGAGGTCCCACTAGACCTGCCGCAGCCACCAACCATAACCCACCAGTCTCCCAAGGATTTCATCATCGACCCTCGGGAGAACATCGTCATCCACTGTGATGCCAAGGGGAAGCCGCatcccagCTTCTCGTGGACCAGGAACGGGACCCACTTTGACATTGACCAGGACCCCAAGGTCACAATGCGACCCCACTCTGGCACCCTGGTGGTGGACATCAGTGGAGAGAAGGTTGAGTCATATGAGGGGGTGTACCAGTGTACGGCCAGGAACGAACATGGGACTGCAGTATCAAACAATATCGTCATCAGACAGTCCAGGTCCCCCTTGTGGTCGAAGGAAAGAAACGAGCCGATCATCGTTCAGGAGGGCGTGTCTCTGGTGCTACAGTGCCGGCCCCCTGCCGGCCTGCCCCCTCCCATCATCTTCTGGATGAACATCAaCTTCCAGAGGCTGCCTCAGAGCAGCCGTGTGTCCCAGGCGTTGAATGGAGACCTGTACTTCTCCAACGTCCTGAAGGAGGACTCGAGGAACGACTACATCTGTTACGCCCGCTTCCCCCACACGCAGACCATCCAGCAGAAACAACCCATCACCGTCACAGTGCTCAACcTGGATGCAATCAATGAGACTGTTGCTGCTTTGTACAATGAAACTGATTTTCTTAGTGATGGCTCGGCGGAGGAGAGGAGACCCACCTTCCTGATTCCGTCTGGCTCCAGCAGCTCCAagatggtgctgagaggacaggtCCTGGAGTTGGAGTGTATCGCTGAGGGACTacCCACTCCAGAGGTCTCATGGAGTAAGGTGAGCGGGGAGTTCCCTGCCAAGCGGACCTCCTTCCTGCACTTCCAGAAGACACTGCGCATTGTTGACGTGTCTGAGGCGGACGCCGGAGAGTACcgctgcaccgcccgcaaccgcctGGCCTCCGTACACCACACCATCCGCGTCACCGTCAAAGCGGCCCCGTACTGGATCAGTACCCCCAGAAACCTGGTGCTGGCTCCCAGAGAGAGGGGTAATTTGATCTGCAGGGCCAGCGGTACCCCCAAACCCACCATCACCTGGGCCATGAACGGAATCCCCATAGAAAATTCACCTAAGGACCCTAGTAGGAAGGTGGAGGGCGACACCATCATCTTCGAGGAAGTTCAGACTGGATCCAGTGCAGTCTATCAGTGCCACGCCTCCAATGAATATGGATATCTGCTGTCCAATGCCTTCGTCAACGTTCTCTCTGAAACACCCAGAGTCCTGACACCAGCGAACAAGGTCTACCAGGTGATCAGGAACAGCCGCGCCTTACTGGACTGTTCCTCCTTCGGCTCGCCCATCCCCAAAATAACATGGTTTAAGGACAGCAGGTCCAGCACCCTGGACGGGGACCCCTATGTGCTGCATGAGAACGGGACTCTGGAGATACACGTGGCCCAGGCCCTCAACAGTGGGAAGTACACTTGTGTGGCCAGGAACTCTCTGGGCATCTCCGAGAACCACGTCTATCTTGAGGTCAAAGAGCCCACGCGTATCCTGAAGCAGCCGGAGTACAAGGTGGTGCAGAGGAACAGGAACGTGGTGTTTGAGTGTAAAGTAAAACACGACCCCTCCCTCATCCCTACCATGACCTGGGTCAAAGACAACGGAGAACTACCCGACGACGAGAGGTTTGTGGTGGACTCTGACAGCCTGACCATAACAGACGTGACAGAGAATGACGCAGGAACCTACACCTGCATCATGATCACTACTCTGGACCAGGACTCTGCTAGCGCTGAGCTCACTGTTGTCGAGGCAGCTCCTACTCCAGCTATAGTCTACGAACAACCAGACCCTCCTACTGACCTGGAGCTGACAGACCAGAAGCCCAGGAGTGTCCAGCTCACCTGGATACCCGGAGACGAACACAACAGCCCTATTcacatgtttGTGATCCAATACTCAGACTCTCTCCACCACCATGGCCACTGGCACAACCTGACTGTGGTTCCGGGCACCAAGACCACGGCCCACCTTAAGCTGTCTCCTTATGTCCACTACACCTTCCGAGTCCTGGCCCTCAATGCCGTGggcctctccaacccctcctTGCCCTCCCGCGTATACAAGACCAACCCTTCAGCTCCAGATGAGAACCCCAGTGGAGTTGATGGCTTTGGAACGGAACACGACAACCTTGTGATCTCGTGGAAGCCAATGTCAGGTCACCAGGCCAACGGACCAGGCCTGCAGTATAAGGTGATGTGGAGACAGAAGGACGTGGACAAGGAGTGGACGTCAGTGACCGTGGCTAACGTCTCCAAGTTCATGGTCTCTGGCACGCCCACCTTCACACCCTACGAGGTCCAGGTTCAAGCCATCAACGACTACGGGATTGGACCTGAGCCTGCTGTGGTCACCGGGCACTCCGGGGAGGACTTGCCGATGCAGGCACCAGACAATGTCCAGGTCCTCGTGTTGAACAGCAGTCTGGCTGAGGTGCACTGGGAGCCGGTCCCTCCTAAGACAGTACGGGGACGTCTTAAGGgatacaagGTGTACTACTGGCGTGAGCGGAGTCTCCACAAACACAACCCCCACCATGTGGAGCAGCAAGTCCTGACCTTCAGTGGGAACAAGAGCCATGGCATGCTCCCAGGCCTGCAGCCCTACAGCCTCTACCTGTTCAACGTCAGGGTTTTCAACAGCAAGGGGGAGGGCCCCGCCAGCTCCAACCAGCAGTTCGAGACCCCTGAGGGAGTCCCTGGGCGGCCATCTTTCCTGAGGATCACCAACCCTAACCTGGACTCTCTCACTCTGGAGTGGGGCCCTCCCTACGACCGCAACGGACGCCTCACCGGCTACACCCTCAAATATCAGACCGTCAATATCTCCGACGTCCTGGGTCCGGTGGAGGAGCTGGCCCTGCCAGCCAACGAGACCTCCGTCACGCTCCTTAACCTCAAGTACAGCACACGTTACAAGTTTTATTTCAATGCCAAAACAGGCCAGGGAGCAGGGCCTGTCGTTACAGAGGAAGCCGCAACGATCATGGACGAAGGGAACACCCAACCCTCACCTCCCGTAGCACGGTCTCCTCCGGCACACCTCCCATTCCACAAGGTGCATCCAGCGGCTCCGGCATTCGGGAACGTTAGCTCTTCAGTGGGAGAGGACGGAACGCTGATCAGTTGGGAATACTGGGGAGTGGAAAAAAACGTTTATGTAGAATATATAGTAGAGAACGATAACAGTGAAGAGGAGTGGCAGAAAGAGTATGTAAATGGCTCTCGGGTCTATGTGCTGAAGGGCTTAAAGGAGGGCCTGTCCTATAGGGTGCGAGTGGTCGCCAAGGGCCACAACGGCCAAGCGGTGCTCCACCAATCAGAAGAGCTTTTGGTGATGATTCCAGCTATGGCAGCCCGACAGGTGGATATTGCAACTCAGGGCTGGTTCATTGGCCTGATGTGTGCCATCGCTCTCCTCATCCTCGTTCTCCTCATCATCTGCTTCATACAGAGAAACAAGGGAGGAAAATACCCAGtgaAAGAAAAGGAGGACGCTCACACAGACCCAGAGTTCCAGCCCATGAAAGAGGATGACTGTACTTTCGGGGAATACAGTGACACTGAGGACCATAAGCCGTTAAAAGGGAGCCGCACACCGTCTAACGGGACGGTGCACAGGGACAACAGTGACGACAGTTTAGTAGACTACGGCGGCGATGGTGGAGACGGCCAGTTCAACGAGGATGGGTCTTTTATTGGACAGTATAGCGGGAAGAGCTCCGCCAGGGACACTGCTGGGGGCCACGAAAGCTCAGAGGCCCCGTCCCCTGTTAATACCTCCGCTATGAACTCCTTTGTGTAGCCGGCTGGTTGATCAGTAGGTCAGCCAGGTGGAGGGATAGGCAGCCAGGCCAGTAGGCGGTGCTGCAGTAAACTGAACTCCTTTGTAGCCAGCTGGTTAAACAGCCAGGTCCATAGGTTTGTGTAGCCAGACATTTGGACATCCAAACCTGTAGGAGCTCTCCAGTGACTGTTCCCTTCGCCATCTTCACAGGGCTGTTCCTCACGTCACCTTGTGGCTTATTGTCATCCCATGCCCCGCCCATCCGCACACTACTGTCACAAACACATAGGAGACTTCTTAATTAAGAGACACATAACAGACACGTGTGAGACTCTCTACACTGGAGGATTGTACGTTATCATTTGGAAATCACTGAATTTGTGGAGGGATTGCGGAGACTGTTCCAACTCTTTTATTCTCTGTAGCCTGTTGACTTAGTAGCGACCACTGAAATGATGCACAAACACATATTAACACAAATGAGTCGATTATTACATGGAAGCTATTGTCTATTTATCTTTATCTTGCTATAGGGTACACATTTGAATTATTTGGGTTTGCCATATGGTTTTTCCGGTCAAAGCATTATCTTGATATTAGTGTGTGTGTTCGAGGTACTTTGTCCTTCAGGGCAACCGCAAAGAGGCATCAGTGTCTGTCGACATGGTGGTGAAACATGTTACTAAGTACATGAACATCATTCCATGTCTTTTTGCAAGACAGTTGCATCTACCGTGCAGGATGATGTCCAGTGAGCTCCTAAAAGTATTCTCCTGCCTGAATCTGTGATTCCGACTCCAAGCAGGCTCAATCAAGCTTGACTCAAGTTACATCAGTCGCTGCATCCACGCCCTCACCAGGGGATGCTGGTGCCACTTTAAATGGGGGAGGACAGGCTCGCCGTAATGGCTCAAATTAAATTAACGGGACGGTATCaaacaccagcctccactggtgctcACATGTCACCTTTGTTTTGATCACTGCAAATGCTGAAGTGCGGCATGCtgtcatgacatcatcatcataaccttTGACCTGCATGTGACCTTACTTCCTGTGGTTGCACATCCCATGACCTGACGGTGActttatggctctttctgtgcgACCCAAAGTGCATGTACTGACATCCAACTATTTTCTTTCGCTTTTCTTTCAAAATGTTGCGTTTATTTGTGGTGCTGTGTGGCCTTCAGCAGTACGGTGCCTTTTAATACAGAACTCTGATTCAGTTCAGTCTAGATTAATTCACAAAGAGACCGTTTTACCCAGAGTTCAGTGAGTGGAATGCCCATAAAGCAATAGTCATACTCTGAGGATGATGGGTTCAGCTAGGAAGGATGAAAGGATGGAGGACTCCATAAATTAAGGAATAATTCATACAGTCATCTTTTGAAAAGCTTCAAAATGCTTCTCCCTCAGATAAGCGGCTTAGGGTTGCCATATTGGACACGGTCAAGGCTCTGTACATTTTTTCAAGGTTCGGGTCACCTACGAAGTGTTTGATCATATTTCTgcgctgtgtgtgcgtgcgtgttgaGGGGATAATATTCATGCGAGTCACTTATACTAACTACATTTGATGGCCTTTGGTGTGATAAGGGAAGGGATCGAGATGTTTATTTTAACTTGCATCAAGTTTtacgttgttgtttttttttgaaTGAACATTATCTGTCGCATTTGTAAATATATACTCTAATTGACTGTACAGAAAACCACTGCAAGAGGAGCTTAAAATGGATAGTTCAGCCAAACATTTGATCAACTATCCCTTTTAAGAGCCTGGGAGGCAGAACTGTGCATGAGAAGGTTTTGACTGGCTAAGAGAGCTGTGTTCAATATAGACTACTTCTATAGaataaatataattttttttgttaCTATTTCTTTTTTTCTTTGCTGTGAACATTGTGCATTATTGTAACTAACAGGACAAGACGTTGCTCATGAGTTCACATTTGGATGGTTTCCATTTGTCCGCGATATCGTTGTGTTTTTCCCGAAATGTCCCTATTTTGTACTAAATGAAACCATTACAGTACTCTGGAAGCCTTGAGATGTAATGGACTTTGGAGTGTAAGAGAAGTACCCCTCGATGTACTGTGTCATTCTGGTTTGTGTTGCTTATATGAGCAGCACAAGGTCTGCCAAACTCTTCCACTTTGTGACCGTATTGAAAATGGTTTGGTGTTCTTATTCTAAAACAGTTTCAAGGTTTTTACTAacaatttatttgtatttaagtTTCTCCACGTAGTGAAATAACGAATTTCCAAGTAACTTGAAATATAATGAATTAATAAAGTATTATTATCTTCTTCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64013 lncRNA downstream 20600 52312406 ~ 52313295 (-) True G57589
TU63692 lncRNA downstream 190804 52142852 ~ 52143091 (-) True G57301
TU63675 lncRNA downstream 200145 52133508 ~ 52133750 (-) True G57284
TU63672 lncRNA downstream 205817 52127826 ~ 52128078 (-) True G57281
TU63654 lncRNA downstream 220812 52112861 ~ 52113083 (-) True G57263
TU64099 lncRNA upstream 1537 52449837 ~ 52450058 (-) True G57674
TU64121 lncRNA upstream 18009 52466309 ~ 52466668 (-) True G57696
TU64123 lncRNA upstream 19365 52467665 ~ 52467906 (-) True G57698
TU64141 lncRNA upstream 30776 52479076 ~ 52479302 (-) True G57715
TU64143 lncRNA upstream 31266 52479566 ~ 52479783 (-) True G57717
XM_021604503.2 mRNA downstream 12300 52206796 ~ 52321595 (-) True LOC110524655
XM_021604512.2 mRNA downstream 66780 52206796 ~ 52267115 (-) False LOC110524655
XM_036989650.1 mRNA downstream 136690 52192622 ~ 52197205 (-) True LOC118966705
XM_021604493.2 mRNA downstream 233699 51992437 ~ 52100196 (-) False LOC110524646
XM_036979643.1 mRNA downstream 447219 51850982 ~ 51886676 (-) False LOC110524618
LOC110532407 mRNA upstream 10957 52459257 ~ 52462122 (-) True LOC110532407
XR_005051372.1 mRNA upstream 51039 52499339 ~ 52503763 (-) True LOC118964321
XM_021604632.2 mRNA upstream 116722 52565022 ~ 52588220 (-) False LOC110524730
XM_021604642.2 mRNA upstream 116722 52565022 ~ 52588220 (-) False LOC110524730
XM_021604624.2 mRNA upstream 116722 52565022 ~ 52588273 (-) False LOC110524730
TU63128 other downstream 586675 51746617 ~ 51747220 (-) True G56764
TU62721 other downstream 929552 51400727 ~ 51404343 (-) False G56372
TU61955 other downstream 1541826 50777747 ~ 50792069 (-) False LOC110524514
TU61953 other downstream 1550051 50777747 ~ 50783844 (-) False LOC110524514
TU64168 other upstream 47598 52495898 ~ 52496234 (-) True G57742
TU65118 other upstream 691158 53139458 ~ 53140304 (-) True G58565
TU65226 other upstream 886424 53334724 ~ 53338387 (-) False LOC110525078
TU65227 other upstream 888309 53336609 ~ 53338387 (-) True LOC110525078
TU65285 other upstream 977664 53425964 ~ 53426316 (-) True G58718

Expression Profile