RNA id: XR_005052255.1


Basic Information

Item Value
RNA id XR_005052255.1
length 4180
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110525860
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 59599905 ~ 59608419 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caggatgctctcgatggtgcagctgtagaacgttttgaggatctgaggacccatgccaaatcattttcagtctcctgagggggaataggcattgtcgtggcctcttcacaactgtcttggtgtgtatgGACCATGATAGTGTCGTGACATGACTACCATTAATGTGTTGATggctattttatcaaatcaattaactGTGTTGAATTAATACattattaaattaatcatgtaacaatgaaCTCATTAGTAACATGGGGCACCATGGAAGAAGTTTGTTTTATGAGTTActgtttcccaaattaactcaagaATATACTAGAATGTATCattatcataccagtcatccattAATCAGTATTatctcatatcagtctcattctaaCATTGCAAAATTCTTGGATATCTGCAGGAACCCGAGTCTAAATAATGATTCAAAGatgcacaaattggtttaattatttatttactaactaaataatcacacagacatacacaaacaGTATAGGTTGAATTGATTTCTAAcataatgcaatgaaaagtccctagtggactaactcgatatgatggcttgttacaccgtgaaaggggtggggacagaaagagtgggagagacagagagttggaAAAATATGCTCATGGGAATGTGAATACATTACACATGAATGGCTGCTCAATCGAAaataattgcaatgtatatatttaaGCTTGTATGTTTTTGTCGTTGCTCTCTGTTGACATCGCCCGGTCCGTCTATGGGGAGTCGTTCGACAGTAGTCTCtggtttgtccaccagaggtAACAATGTCTTTTGTAGTTGTAGTAGGCTTTCTTTGTCTCTGAGTGTTCGTTAGACTGGATCCTTCAGATATACACACGCGGTGGTCTTTGGGTCGAGTTTACTAGACTAACAGTACTTaaacagctgcagactgaatgTTCCGATGTAGTCTTTATCTTCTTCACTCGCGTGGAGAGTTTCTAAACATTTCGTAACGTTCAGCTCACGCTGTTGGTCACGCTGGTCTATATTTAAATTGCAACCATTTCAACGTTTTCAGCCCACGCTGCACGTATATTGGTCTTGTAATTTTTAACCATTTTAACATGTAGCCACCGCTCCATGCTTTCTGGTCTGTATGTTAATTCTTCAGCAAGTCCTTTTAAGCACTCGCCTTGGAGGGCGGTTCCATCATGTTGCCATAATGTTGCCACAAAatcacatttaatcttttcacaaatagtttcatatttaatcatataaaGTTGGTGAAGACGAATGTTCTGAATGGACTCTAAAATTGGAGTGGAGGATACGTGTGTGAATGATAAGGAATCGCTTCTTGTTTGGATGCTTTTGTTGAGTAAGGGTGCATATGTGGGAGACCCGTTTGAGGTGTCGAAAATGGTGAAGTATGCACTGGGTCAGAGTGACCTGGAATTGTTTAATTTGGATTAATTGTATTTATGAAGAACAGAGATTGCAGTGAGCCTTAAAATAATCTGGacagggcctcctgagtggcgcagcggtctaaagcactgcatcgcagtgctagaggcgtcactacagaccctggttctgtGCCGCAGCcagctgcgaccgggagacccatgaggcggcgtgcaatttgcccagcgtcgtccgggttaggggagggtttggccggccggccGGGTTGTCCTTGTCCCACTGCTTTAGAGACTTCTGTGGCGGGCCGGACGCATGCAGGCTGACTTcagtcgccagttgtacggtgtttccttcgacacattggtgcgactggcttccgggttaagcgaagcagtgtgtcaagaagcagtgtggctcgGCAGGGctatgtttcggaggacgcatggctctcgaccttcgcctttcccgagtccgtacaggagtttcagcgatgggacaagactgtctctggatatcacgaaattggggagaaaaaggggtaaaaagtcaaatatatatatataacatccgGACAATAGAAGTTTTGTGTTTTAAACTTCGGAGTAGAGCACCCATCAAAGGAGTCATGTGACGAAGGATGTTCAGGTTCAATACCTGAAGAGAATTCCTAGTGTGGTTGGTGCCCGCCGTCTGACCCGCTGGGTGAATGGAGAAAAAGAAAAAGGTCTGTCGGCCCTGTTGTTTTTTTGGTAAAGAGCAAATACGTATGTGAAGCTTAGTTTTGTAAGATACACTGTAAGAGCTTTCATCCCCAAACCATTGCAGTATAAGAATTGTAAAGGATTTGGCAATGTTTCAAGTGTGTGCAGATGgacagtttagtttagtttagtttatttatttatttttggagTTTGCTAGTTTTTTGCTAGTTTGTTCCATTTTTAGGAATCCTGTTTCCATCCCGCACGGTAGTTGGTGGGATGCACATTAAATTGTGCGATCACCatataccatagaagaagaagaaatgtTTTGAGAAGAATAAACATTGTGAAATGTGAGTATTATGTTTATTTATTCAACAAATTACATTAAAATGTTAATCTTTCATATGATGGTTAAATTGAATCATTAGGACATAACGCAGAGTCAGGTCTCTAGCCAAGCTAGCTACCAGGTGATCTTGTCATTTTTACACTATGAACAATTAATTGTATATTCAGGAATATGTCAATGATATAGGAATGCACAGTTTTAAAATCCTGAATTGGTGATCTTGCTAGGCAGCTAATGACAAATCATATTTTTCAAACTGTTTTCATTCAGGGACGAAAGAGGACAATATATTGGCAGGACAAAACACTCTTTCCCGACTGGTGTGAGGGTAAGAAATTGGAACATTATCTGATAAAAATAAGCAAGAAATGCTTTTAGCTGTGCTCTGCttacttgctagctagccaaatcATTTGTTGTGCGTTGTTTGATTTATGTGCTGTTTTCCAGTCAATGATCATGCATGCCGTCTCTGTTTACTTCCTCTTGTCagtttcctccctctgtctcgtgttccaccattggggttaAAGGTAATGTTACAAGTTAAATAAAAGGCTAATTGTAATCATAGTGTTAAGACTTTGATCTGTACAAATGATCAATTGACGCACAGGCTATGTTATGACCATGGTTCAAAATAATCTAAAGAATAAACGGTAAACCAGGTTAAGCTATATAGGCTACCTAAGCTAAGTCATTGTTATGAAGAATATGTTTTGAAGTATGAAATTAGGGGTTAACAAGTCAGGGTAACAAGCCCCAGCTGAGACAGGTCAGGTAGCCTGACAAGGGTTTGGCTGCTCTCTGCAAACACTGTCCCCATTTCTATATGTACATGAACACgaccccactctctgtctctgttccagtgtaTCTATATTAACCCTGTCGTCTCTATGTCATGGTTCCAGTCTATCTGCAGGTGACCAGGTGGACCTCTTCACCAGGCAGGCCTTCGCTGCAGTCTTACATCACCAGCAAAGGTCTATGAAGAGGTACTTTATATTAAGATCGTGCTTCCAACCTGCTGCCTGGATACCTCAGCATCCACGAGGGCATCATCAAGCATTCTGGTCCAGTGATTAAATGGGTTGATGGAGGGAAGCCATTATTAGGTGTCAACTCACCTGGTCTCTACTGAGTGTCTACACACAGAGTGATGGTTCATATTGTAGCTCACGAGTAGGGACTGGAACATCACCTCAGGTCCTATGTGAAGttTGTGTTCAAGCCAGAGCCAAACTCTGCCAGTGGGGTCAGAATGTCCATGAGGACCCTCAGAGTGTCCATGAGGAGCTGGCTAAAGCCATGACAGCCAACCTCAACCCCTCCACTTACTTCCTCACCAGCAACAAACTGCTACTCGTGGTACTTCGTAGAAGCCCTGGTGAAGTCTATGGCCCAGCATAGGACCCAGAGTGGTAAATTCAACCTGTCTAGCAAACCAAGTTCCTCTGCATCCTTCCACCACACAGTAGAGAAAAATGCTAATGCCTCACATCAACAAGAACTACAAGAACAAACTGGACGCTGCCCGAAACGCCAACTACAGTCTGGCAGTCTTGGTGTGCCATAGACAGCCAACAAAAAATGTGTTGATTTCATTCAGAAAATTGCCACATTTAGTTCTATGGTAATGCTATTTTCTTGCTATGAGGACTGATGACTTATTGTATGCTACACGAAGCAAAATAAATACGTGCACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72634 lncRNA upstream 63952 59535403 ~ 59535961 (+) True G65572
TU72572 lncRNA upstream 152105 59439236 ~ 59447808 (+) True G65519
TU72534 lncRNA upstream 207423 59391152 ~ 59392490 (+) True G65488
TU72504 lncRNA upstream 231895 59355120 ~ 59368018 (+) True G65458
TU72502 lncRNA upstream 251256 59348355 ~ 59348657 (+) True G65456
TU72808 lncRNA downstream 195835 59804254 ~ 59826592 (+) True G65724
TU73187 lncRNA downstream 229472 59837891 ~ 59838094 (+) True G66057
TU73214 lncRNA downstream 254293 59862712 ~ 59862927 (+) True G66081
TU73215 lncRNA downstream 254611 59863030 ~ 59863267 (+) True G66082
TU73227 lncRNA downstream 261024 59869443 ~ 59869818 (+) True G66094
NM_001281351.1 mRNA upstream 114031 59483481 ~ 59485882 (+) True cxcf1a
XM_021606217.2 mRNA upstream 257637 59340539 ~ 59342276 (+) True si:ch211-217g15.3
XM_021606181.2 mRNA upstream 300231 59284324 ~ 59299682 (+) False erlin1
XM_021606193.2 mRNA upstream 300231 59287855 ~ 59299682 (+) True erlin1
XR_002473818.2 mRNA upstream 387738 59210006 ~ 59212175 (+) True LOC110525756
XM_021606358.2 mRNA downstream 117199 59725618 ~ 59778737 (+) False ercc6
XM_036981155.1 mRNA downstream 117276 59725695 ~ 59778737 (+) False ercc6
XM_021606349.2 mRNA downstream 117290 59725709 ~ 59778737 (+) True ercc6
XM_021606368.2 mRNA downstream 177710 59786129 ~ 59793763 (+) True drgx
XM_021606405.2 mRNA downstream 314256 59922675 ~ 59927138 (+) False lrrc18a
TU72488 other upstream 274784 59324636 ~ 59325129 (+) True G65442
TU71284 other upstream 899534 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 934007 58665334 ~ 58665906 (+) True G64315
TU71238 other upstream 1012328 58586858 ~ 58587585 (+) True G64292
TU70900 other upstream 1376783 58221522 ~ 58223130 (+) True G63959
TU73321 other downstream 333067 59941486 ~ 59942064 (+) True G66188
TU75047 other downstream 1706455 61314874 ~ 61315252 (+) True G67806
TU75188 other downstream 2121346 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 3666544 63274963 ~ 63275296 (+) True G70011
TU79281 other downstream 5201170 64809589 ~ 64901624 (+) True LOC110526969

Expression Profile