RNA id: XM_021609108.2


Basic Information

Item Value
RNA id XM_021609108.2
length 1543
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110527672
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67638731 ~ 67642121 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGAGCCCTGAGAGGCATAGGATCAGGGACAGAAAGTGCCAACCTCTATAAGACTCCATGACCACCTTTGCCCCCACACACTACTTTGAAATATTCTCTCCTGACACAACCTGCCTTAGGGACACTACTGACTACTGTTCAGAGACATGTCTTTCCTCAAAGGCATTTTGGGCAACTCAGCGGACAAATATGTCGACCAGGCAGTGGATACGGCAGCTAAAGCTGCCAAAGTCAAGGTGAAGACTATGCTTGACTCTAAGAAGGATCCCAGCGGGGGAAGCAGTGGTAAAGAGAAGGTGAAGCCCACAGTTGGAGGAGATGATTCAAAGAAGAAGGAGTCCAGCAAGGATATCAGTGGAGGTATCGGCGGTATTGGAGGATTAATGGATGGCAACAAGGGCAAAGAGGAAGGATGCTTTGGAAGTTTCTTATCTGGCAAGGATGAGAAAGAGTCAAGTAGCGGAGGTGGTGACCAAGACCTGAACGACCTACTGGGAGACATTGCAGGAGATATATCTGGCGAGAAAGATGGCAACTAGAAGGACAACAGCAACGCAGACCAAGTGTGATCATTTGGGAAGTCTCTTTGGCTGAGTCAGACTGAAGCCGTTTCTTTTTCTCAATGTAATCTTAATGGTCCTATCCCTctctcacctgtgtgtattttcctCACTAGCAATGTCTCAATGATGTCCCTGTTCCCCAGGGGCATTTCTCTGATATACACATGGTCTATGCATGTCTAAGATCTGAATTGGACATAAGAGGAACTGGAGCTAGGGATGAACCTATTCTGGTAACAGATCAATCAAACTGACATACCTCTGGATATAGCCTATGAAGAATATTATGACAACTCAATACTGTCACAATGCAttgtgtaatgttaatgttttgtattatatttgaaaagtaaataaaaatgtttagcCCAAAAGTCTGTTGAATGCTCAGATGAGCAAGGATCAgaccctttaaaaaaatgttggactaaaatgacatacccaaatctaactcaGGACCTGATGATCAATCTGACATACCTCTGTATTACCTATGAAGAATATGATTTTATTGACCACCCAATACTGTCACAATGCAttgtgtaatgttaatgttttgtattatATCTTAAAAGTAAATCAAAAGTTTTTTTAGTTTTagatttcattttttaaattacctTTATTtcacttggcaagtcagttaagaacaaactcttatttacaatgatggcctaccggggaacagtgggttaacttgtccaggggcagaacgacagatttttaccttgtcagctcggggaatcgATCTGGAAACCTTttgtttactggcccaatgctctaaccactaggctacctgtcgcctcAAATGCCTGTCTGAGCAGGGATCTGACCCCTTTGACATCACCAAATCTACCGgactgtagctcaggacctgaagcaaggatatgcatattcttgataccatttgaagtttgtgtaaatgtgaaattaatgtcgGAGAACACAtttgatctggtaaaagataatacaaacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83298 lncRNA downstream 47647 67590854 ~ 67591084 (-) True G75360
TU83296 lncRNA downstream 53625 67584397 ~ 67585106 (-) True G75358
TU83295 lncRNA downstream 54350 67583982 ~ 67584381 (-) True G75357
TU83294 lncRNA downstream 55298 67583134 ~ 67583433 (-) True G75356
TU83286 lncRNA downstream 63205 67575052 ~ 67575526 (-) True LOC110527634
TU83321 lncRNA upstream 338 67642459 ~ 67642675 (-) True G75383
TU83322 lncRNA upstream 1100 67643221 ~ 67643600 (-) True G75384
TU83323 lncRNA upstream 1569 67643690 ~ 67643964 (-) True G75385
TU83354 lncRNA upstream 81503 67723624 ~ 67725800 (-) True G75413
TU83367 lncRNA upstream 109346 67751467 ~ 67751829 (-) True G75426
XM_036989819.1 mRNA downstream 44991 67575054 ~ 67593740 (-) False LOC110527634
XR_005052590.1 mRNA downstream 121916 67515286 ~ 67516815 (-) True LOC118965291
LOC118966711 mRNA downstream 123514 67514760 ~ 67515217 (-) False LOC118966711
XM_021608877.2 mRNA downstream 139503 67446441 ~ 67499228 (-) True ninl
XM_036983326.1 mRNA downstream 145383 67446441 ~ 67493348 (-) False ninl
XM_021609131.2 mRNA upstream 27552 67669673 ~ 67681775 (-) False LOC110527687
XM_021609138.2 mRNA upstream 27552 67669673 ~ 67681775 (-) False LOC110527687
XM_036983393.1 mRNA upstream 84017 67726138 ~ 67793349 (-) False LOC110527713
XM_021609172.2 mRNA upstream 84017 67726138 ~ 67793350 (-) False LOC110527713
XM_021609179.2 mRNA upstream 84017 67726138 ~ 67793350 (-) True LOC110527713
TU83185 other downstream 250687 67386509 ~ 67388044 (-) True LOC110527584
TU82368 other downstream 628144 66994682 ~ 67010587 (-) True LOC110527436
TU82292 other downstream 815915 66818844 ~ 66822816 (-) False tjap1
TU78947 other downstream 3257375 64369902 ~ 64381356 (-) True LOC110526867
TU77510 other downstream 4360979 63277208 ~ 63277752 (-) True G70013
TU83338 other upstream 27468 67669589 ~ 67681730 (-) False LOC110527687
TU83339 other upstream 27468 67669589 ~ 67681730 (-) True LOC110527687
TU83574 other upstream 515840 68157961 ~ 68162002 (-) True sdhaf4
TU83653 other upstream 568059 68210180 ~ 68211706 (-) True G75682
TU84158 other upstream 933472 68575593 ~ 68577744 (-) False LOC110527951

Expression Profile