RNA id: TCONS_00027272


Basic Information

Item Value
RNA id TCONS_00027272
length 4947
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id XLOC_013278
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 12358383 ~ 12363329 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgcaaactccatgcagaaatgccaactgacccagccgaggctcaaaccagtgacctttttgctgtgtggcgacagcactacctactgcgccactgcgttgccccaaGCTATAAGTTTCAAGACATCATTTGAAATGGTAAAGGTTTCTTCTATGCATGCATAttcacagtaaaaacaaaacattatgacattttattattaagagaACATATTAGATGCACTTTCTGCCATCTTTTCAAAACAtctaacaaaaacaaaccaaaactctGTGTAATGATCATATGATCAGAGCTCAACGAATCAAGATAGGAGTAATCCAGAAGAGCCAATCAGGGAGTGAATTTGTGGAGCCACgccttttttataattaatttttcggggttttcaccttaATTGGATAGGACAGTAGAAAGTATTGACTGGAAAGtttggggagcagagagaggggaagaatTGCCATAGGACCTAGAGGCGGGAATTGAACTCGCGGTCGCTGTAAACACCGAAGTGCATATGTCAATGCACTTTCCACTACACCTCTGGCACCAATAAAGCCACGTCTTTTTAGGTCATCTACTTCGAAACCTAACTAAGTCTTCTAATTAAAACAAATCTGAAGCATTTTCAAAAGTCTCAGTTTTTGAGTGTCTAAAACAGGgttgcccaaacttggtcctggagtgcttattttagtttcaaccccaataaaccacacctgaaccagctaatcaagctctttctaggtatattaGTAACTTCCAGGTAAGTGTGTTgtaggaagttggagctaaactatgcaggacaccctGGTCTAAAACTTCTAACTAGTTTGTATTCCAGGCATAACCCTAGTAAAAGTTCAAATGAAAATACACAAGTGTAAACATACCAATAGTGTGTATCTGATCACATCCCAACAGAAAGACTAGCATTGAATTTTACTTTGTCATATTTGTGAGGTTAAACAAAAGGAGCACAAAAGCCATTTAATTAGCTTTCAAAGATGGTGCACTCAAAAAGATGGCAATGGAATTACCAGGGGTCTTTCTCACTAATAACACCATAACACCCATGCCTTGGTAGCCATTGTTTGTCGTGTGACCATGTTTCTTGTCCGTGAGTCAAAAATCATTCAGAAACCAAACAATGTGTAGTCTGAGCCTGGCATTAGTCTTGTTTTAAAggtttgcgtgtgtgtttttcATATTGTGTTGTTTATTTGCTGTGTCACTGCCTTCACCGTTGAAtcgttggtcacactttacaatacggttCTATTAGTTTATGTATTCACTAACATAAACTGAGAATGAatcaatacttgtacagcatttattaatcatagatcACTTACTTTGTTACTAACgcataaaaaaaatagcaaattgTGCTTGTTAAGTAGTGGTTAAAGTACATCCAGATGGTTGTTATATCAGAATAAAGTTGCTAAAAGGCTTATCGGCAGTTGTGTGACTACTGTAAGTCTGTTctataagactgaagggctttttttctgtgaaaacagccatctggatgtactttattctaCTTTTTGCATGACTACTTGTCACAAAATTTAAAAACTAGATGCAAAACATTGCTCTGagctgtaaatgtttttttttttttcaacaaactaATGAAAACGGCTGAATGGAGCGTACACTAATCTATATATTATTCagtcactagatggcgccaaataaTCAAAACAGCAGCGTAACAAACATGCTTATAAATATGAACACATTCACTGATGGTCAGGATGATTAGAAGTACCCATATGCatctgtgttattagtttcagcaGTTGGTTTCTCTAAATAAAACACCTTGAAatgtcatgactgaccaatcagaatcaagtattccagacagtcGTGTTATAACAGGAGCTAATGCACTGTAAGGTAACAGTAAATGATTTTTCCCCATtacctaatgttaacaaagatgaataaatgctgttctGAATCATTCACTATTGGTTTGTGTCAGCAAATATATTCAAATGAACTAAttgagccttattgtaaagtggtaCCGAATCACTTTATACCTTGCACTGGTTCTTGTATAGATTCTGAGAAGTTGAACTGCTTTTGATACCTTGAATTGATCTACAGATTGacctgcttcttttttttttttttttttttttttttgttatactgtacatttttcttttttgcctGTGGTCTTGCGATGCTgatcctttcattttcattaacgGCCATTAAGCACACATTGCCTTCATGATACAAGTATTGAACCCTACTTGTGGGTCCAGTAATAGCATTTGAAGTAGTGATGTTTTTCATCTTCATTTGCCTTTATTGTGTTTGGCGTCTGCAGGAGTGCTGGATATACAGCTTCAGTTTTATCCAGTTTGTTATATATAAAGGAAACTGGGCTGACATGAATGAGGCAGGATTACTATGATTTGACAGGTTGTAAAGGCATGCTAAGtcattttcagtaatgtactTACAATAGTGCTTCTCAAACAGTTATTAAGTGAGTGATgggcttattttaaaaatacattaataataacagtaaattaaGAATTGCTtaaccaaaaatatatttaataaatttgaatCAAATTATGCCTGATTTTGTCGACAATTACTTAAAATATCAGTCTCACTTTAATGAAAAGCATTACCAAAATGTTACAGGTGTCTTGCTTTCCAAAATTATGCAATTATTTGATCAAAGTAAACAGTAAAACTGTGAATTACTACAATTTACAATAATCATTTTctcttaataaatgttttaaaacaccgTTTATCTCTGTGAGAATGAATCTGAATTATTACATAAGTGTTTAATGTTACAAAGACATAGTGATACAATAGTACAATAGTACAATAGTACAATAGTACAATAGTGATTCTCAAACAGTTATTATGTAAGTGATCGActgattttaaaatacattaataatattaataataataataataaattaagaatTGCTTCATAAAgttctaaaatatttaataaatttgaatCAAATTATGCCTGATTTTGCTGACAGTCATTCAAATATCAGTCTCACTTCAGTGAAATGCATTACCAAAGAGTTACAAGTATTTTACTTTCcaaatttatccatttatttgatcaaaattataataaaaattaaatactgcaATTTTATAGAATCATTTTctcttaataaatgttttaaaacgcCATTTATTCCTTTGAGGATGAATCTGAATCATTACATAAGTCTTTAGTGTTACAAAAAAATTAGTGGTTCTCAAGTTATTATGTAAGTGATGGATTGAttttaaaatacaacaacaacaataataataataataagaagaagaagaagaagaattgctTCACATTAGttcaaaaattcaaaaatatttaatcattttgaaTCAAATTATGCCTGATTTTGTTCACATTTATTCAAATATCAGTCTCACTTCAGTGAAATACATTTCCAAAATGTTTCAGGTGTCTTTCTTTCTAAActtgtgcatttatttgatcataaagtgaaataatacaattttatagaATCATTTTctcttaataaatgttttgtccCTATCAGGTTGAATCTGAATAATTACATAAGACTTCTCTGTTCTCAAACAGTAAGTGATTGaccaattttaaaatacattattaataataataataataataaattaattgtcCACAATCATTAAAATATCAGTCTCACTTTAGTGAAATGCATTACCAAAATGATAGAGGTGTCTTGCTTTCCAAAATAAAATGATgcaattatttgatcaaaaatatagtaaaacagtgaaatactacaatttaataaaatcattttctcttaataaatgttttaaaacaacatttatccCTGTGAGAATAAATCTGAATAATTACATAAGTCTTTAGtgttacaaaaacattaaaatgtttatattttatgttcaagAATATTTCTGAATATCAGTGTTGATTACAGTTGTGGCGATTAgtattttttaacacttttgtaaGTGCATTACtctcaacacatttttatttactaaaaattGAGGAATGCATTGTGATAGTTAACAAATTATGGTAGATGCTGAAGAGCTTATTCTTTAAACTGTTCTTTTGTATTCATTTTCAAACTGAACAATCTTGAAATTAAAAATGACACCCACAATGTGCTCACTTGAGTACTTTTAGTATTACCACTGTGTAAAGGGTATTACAGTTTGACTGATTTAAACTCAAAGAAATGATGAAGGTGTACTTCTTAGGCCATCTGTTGACTATGGACATCAAGTGCTTAACATTTCATAgcacaaaggttttttttttaatgttttttttttttttgaatatttgttCCAGAATGCACTATTGCTCATTAAACTACTGTTGATCAAATGGGTGCAGTATATTCCTTTGTGACTTCATGCTTTTGATGTGTTAGAAGAGCATAAAACTGTAGTACTAGACTCCTGAAACACTGATCCCGGCTACTTGTACTTTATTTCATGCTGAAGTTTTGTTCTTGCCTTTGTGCTGAAACTATTTTTGTGTTGATGTTGCAAACAGGAGCATATCATCTGCTCTAAAGGAACAATTCTGTTACCTTGTGTCTTAATCTGCCCTCGTTTAATTGTTGgaatgagtttttttgttttcgattttgtTAAGTTTTTATGTCTGGTTGAAATTTTCTTGACCTGTAGTTAAACATCTGCTGATTCTTAATTTAAGTGACAATTAAAAAGTATTACAGTACCATGGTCCACTGTTTTTTGGTTCACTGAAACTTTGGAAGTGCTCGCttttgaataaagaaataataattcatCATTAATTTATCAGAACTGAAACATAGCTGCAGTTtgcatgggtgttttctagtactgggttgcggctggaagggcacctgctgcgtaaaacatgctggaatagttggaaggaaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:1902036 regulation of hematopoietic stem cell differentiation biological_process
GO:1901532 regulation of hematopoietic progenitor cell differentiation biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:2000736 regulation of stem cell differentiation biological_process
GO:1903706 regulation of hemopoiesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0051240 positive regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048863 stem cell differentiation biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0045597 positive regulation of cell differentiation biological_process
GO:0071711 basement membrane organization biological_process
GO:0061564 axon development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0051094 positive regulation of developmental process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026957 lncRNA downstream 4109 12346296 ~ 12354274 (-) False XLOC_013277
TCONS_00027271 lncRNA downstream 4195 12351884 ~ 12354188 (-) True XLOC_013277
TCONS_00027270 lncRNA downstream 642061 11713285 ~ 11716322 (-) True XLOC_013273
TCONS_00027269 lncRNA downstream 802747 11464553 ~ 11555636 (-) True XLOC_013271
TCONS_00027268 lncRNA downstream 803333 11416718 ~ 11555050 (-) False XLOC_013271
TCONS_00027273 lncRNA upstream 499275 12862604 ~ 12863523 (-) True XLOC_013284
TCONS_00027274 lncRNA upstream 714514 13077843 ~ 13114318 (-) True XLOC_013288
TCONS_00026294 lncRNA upstream 918325 13281654 ~ 13287651 (-) True XLOC_013291
TCONS_00027275 lncRNA upstream 2400574 14763903 ~ 14765883 (-) True XLOC_013300
TCONS_00027276 lncRNA upstream 2824688 15188017 ~ 15191812 (-) True XLOC_013310
TCONS_00026274 mRNA downstream 30905 12276567 ~ 12327478 (-) False XLOC_013276
TCONS_00026276 mRNA downstream 30957 12277303 ~ 12327426 (-) True XLOC_013276
TCONS_00026275 mRNA downstream 63291 12276697 ~ 12295092 (-) False XLOC_013276
TCONS_00026270 mRNA downstream 87535 12236044 ~ 12270848 (-) False XLOC_013275
TCONS_00026277 mRNA upstream 1404 12364733 ~ 12416019 (-) False XLOC_013279
TCONS_00026278 mRNA upstream 1404 12364733 ~ 12451772 (-) False XLOC_013279
TCONS_00026280 mRNA upstream 101132 12464461 ~ 12612699 (-) False XLOC_013280
TCONS_00026281 mRNA upstream 101616 12464945 ~ 12654011 (-) True XLOC_013280
TCONS_00026285 mRNA upstream 475797 12839126 ~ 12858016 (-) True XLOC_013283
TCONS_00026267 other downstream 1041402 11281593 ~ 11316981 (-) True XLOC_013270
TCONS_00026260 other downstream 1916925 10441343 ~ 10441458 (-) True XLOC_013266
TCONS_00026258 other downstream 2278179 10080090 ~ 10080204 (-) True XLOC_013264
TCONS_00026257 other downstream 2553919 9804348 ~ 9804464 (-) True XLOC_013262
TCONS_00026256 other downstream 3091205 9267063 ~ 9267178 (-) True XLOC_013259
TCONS_00026279 other upstream 88380 12451709 ~ 12453550 (-) True XLOC_013279
TCONS_00026282 other upstream 168717 12532046 ~ 12532160 (-) True XLOC_013281
TCONS_00026283 other upstream 397473 12760802 ~ 12762692 (-) False XLOC_013282
TCONS_00026284 other upstream 398281 12761610 ~ 12765452 (-) True XLOC_013282
TCONS_00026288 other upstream 582288 12945617 ~ 12945731 (-) True XLOC_013286

Expression Profile

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