RNA id: TCONS_00027274


Basic Information

Item Value
RNA id TCONS_00027274
length 397
lncRNA type read_through
GC content 0.46
exon number 2
gene id XLOC_013288
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 13077843 ~ 13114318 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCCTTCAAGACCTCCTCACATGATAAATGACCACATTCATTCGTCACAACATACTTGTAGACGTCGAGACTGTCATCCTCCACTACGTTTTCTGCTGATACATGAAACGTAATGCAAGAGTCAGTACAGACAATGATATCACAACCTCAAGGACTGATACCAGCCTGATAAACCCCAGGAGAGATGGATAAACATTCACACTGGCCTGCCTTTTTTTCGCTGACGATTTTTTTCTTCCATGCATTGGTTGCTGGGATGAAGGCATCACACAACCCTGCTGGGAATACCGTGGAATCTGTTCACCTTCCAAAACCAGCACTGCATCTTGAAAACAGTCGTCCTGTCTGAAAGACTGAAGGACCCTGAGAAGCTTCTGGGAGTGCTGAGGGTCCGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027273 lncRNA downstream 214320 12862604 ~ 12863523 (-) True XLOC_013284
TCONS_00027272 lncRNA downstream 714514 12358383 ~ 12363329 (-) True XLOC_013278
TCONS_00026957 lncRNA downstream 723569 12346296 ~ 12354274 (-) False XLOC_013277
TCONS_00027271 lncRNA downstream 723655 12351884 ~ 12354188 (-) True XLOC_013277
TCONS_00027270 lncRNA downstream 1361521 11713285 ~ 11716322 (-) True XLOC_013273
TCONS_00026294 lncRNA upstream 167336 13281654 ~ 13287651 (-) True XLOC_013291
TCONS_00027275 lncRNA upstream 1649585 14763903 ~ 14765883 (-) True XLOC_013300
TCONS_00027276 lncRNA upstream 2073699 15188017 ~ 15191812 (-) True XLOC_013310
TCONS_00026327 lncRNA upstream 2181718 15296036 ~ 15311911 (-) False XLOC_013312
TCONS_00026328 lncRNA upstream 2204068 15318386 ~ 15320930 (-) True XLOC_013312
TCONS_00026287 mRNA downstream 21042 12867822 ~ 13056801 (-) True XLOC_013285
TCONS_00026286 mRNA downstream 120392 12867400 ~ 12957451 (-) False XLOC_013285
TCONS_00026285 mRNA downstream 219827 12839126 ~ 12858016 (-) True XLOC_013283
TCONS_00026281 mRNA downstream 423832 12464945 ~ 12654011 (-) True XLOC_013280
TCONS_00026280 mRNA downstream 465144 12464461 ~ 12612699 (-) False XLOC_013280
TCONS_00026290 mRNA upstream 9405 13123723 ~ 13133268 (-) True XLOC_013289
TCONS_00026291 mRNA upstream 81427 13195745 ~ 13203351 (-) False XLOC_013290
TCONS_00026292 mRNA upstream 87351 13201669 ~ 13203351 (-) False XLOC_013290
TCONS_00026293 mRNA upstream 87351 13201669 ~ 13203401 (-) True XLOC_013290
TCONS_00026295 mRNA upstream 209822 13324140 ~ 13360106 (-) False XLOC_013292
TCONS_00026288 other downstream 132112 12945617 ~ 12945731 (-) True XLOC_013286
TCONS_00026284 other downstream 312391 12761610 ~ 12765452 (-) True XLOC_013282
TCONS_00026283 other downstream 315151 12760802 ~ 12762692 (-) False XLOC_013282
TCONS_00026282 other downstream 545683 12532046 ~ 12532160 (-) True XLOC_013281
TCONS_00026279 other downstream 624293 12451709 ~ 12453550 (-) True XLOC_013279
TCONS_00026297 other upstream 362784 13477102 ~ 13478222 (-) True XLOC_013293
TCONS_00026298 other upstream 429932 13544250 ~ 13544367 (-) True XLOC_013294
TCONS_00026302 other upstream 1222309 14336627 ~ 14337458 (-) True XLOC_013296
TCONS_00026312 other upstream 1752065 14866383 ~ 14871136 (-) True XLOC_013303
TCONS_00026322 other upstream 1921833 15036151 ~ 15036269 (-) True XLOC_013308

Expression Profile

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