RNA id: TCONS_00026382


Basic Information

Item Value
RNA id TCONS_00026382
length 4962
RNA type mRNA
GC content 0.51
exon number 9
gene id XLOC_013342
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 17270427 ~ 17399376 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGTTTCATGTGTAGATCGAGCCCCGTACAGAACTGCGCTCTTCTGACTGCGCTTCACCGGACTAGACATAAACAAATCATTAAAAAGCTAAAGGTTTTGTTTCCCCCAGCTGCACGCGCGCTGTCAGGGTTCTCGTGTTTACTGTGGCTGACGGAGAGGATAGATCGCTCATCTGGGAAGACGTCGAAAAGTAACTAAGGTTCACTCGGCCACAGGTAGCTCTTTCTGGGCTCTGAATATCAAAGTACAGGTCATGCGGGTGTCTCCGGACGGCCAGAGAACTGTGATCCAGTGCCGCTGTTACTGCTAGTCGCCTCGGAGGACGGATCGCTTTTTGCCGCAACTAAAGCAGGACCGACGGAATAAAATAAAGCATGTCCCGAAGAAAGCAGAGCAAACCCCGGCAGATCAAACGCTCTATTGGGGATCTTAATGGAGGTGAGGATCCATCTGATGATGTCAGCATGTCGGgagaagagggcggagcttcaGATCAGGAAGACTCTGCCGAATGTGACGGTTCAAGTCCACATTCGTTTACACCGCTTTATAATGAAGAGCCAAGAACGCACGAGTCTCTGGCAATGGCAGACGAGGGCGAGGAAGATGAGAAAGGACTGAAGCGCTGCACAGaagatgaagaggaggaagaggtgGACAGGGAAGGGGAACCCCAGTGGAACGGCCCAGATGATCTTGTGCTAAGCGGCAGCTCTGATGACTTCAAGGTCTTGGCCCTCAGGGACCTGTCAGGTGACACGGTGTGGGGTCCATTTTCCGGCAGCATCCAATCAGGAGAGCCGACAGATGGACCTGCCAGTGAGagttCTGCAGTGTCTCTGGTGTGTGAGGAGCCGGACTGCTGGCTCAGAAGAATCCCTGTGACCTCAAACCCCACAGACTCAAACTGCACCATCTACAGTCAGGGAGTGTTGTTCTGTAAGCTGACACGGGAGCTGTCCGGTGGAGATGCTCTTCTGGCTTCGCTGTCCAGCTCCAACGGTGATCATTCAGCAGGGACTCAGACCCATGGCGTGCGGGTGAAGGAGGAGCCTGCATACCCTGCCGCTCTGCACTCGGAGATCCAGCTCCTCCCGCAACAGGCTGGCATGGCTGCCATCTTAGCCACTGCTGTCGTTAATAaaGACATCTTTCCTTGTAAAGACTGTGGGATCTGGTACAGAAGTGAGAGAAATCTCCAGGCTCATCTCATGTACTACTGCGCTAGCAGACAGAAGCAGCAGACCGCAGCTTCTCCTCCACAGGACAAGCCGAAAGATTCATACCCCAACGAGAGGCTGTGTCCCTTCCCACAGTGCAACAAAAGCTGTCCCAGTGCCAGCTCTCTGGAGATCCACATGAGAACACACAGCGGAGAGCgtccatttgtttgtttgatttgccTGTCAGCTTTCACCACTAAGGCAAATTGTGAGCGGCACTTGAAGGTTCACACAGACTCGCTGAATGGTGTGTGTCATGGCTGTGGCTTCATTTCCACAACACGAGACATCCTGTACAGCCACCTGGTCACCAGTCACATGGTTTGCCAGCCTGGCTCTAACAGTGAGGTGTACTCGCCTAAACTGCCGGTGGCTGCAGGCTTGAGTCCAGGAGACTCTGGCATTGTTCTGAAATGTCAGGTGTGCGGCTACTCTGCTGACACTCCTGCATTACTTCAGCAGCATGTCCACACACACCTGGAAGTGAGGGTTCCAGCTGAGAGGAGCCCCACACCTCGCCAGAGCAGTCCTCCTTCTTCTGAGCTCCCTGAGCTGCAAGAAACGGAGCCTGCTGCCTGCGTGCCCCGACCTGACTCGTCCAGCCCTGGAGCCAATGGCAGCTCAGCCTCTCAGGGCTACAGTCCCCTCAGCCAACTCAACATCAAAGAGGAGCCACGTTCAGACTATGAAAACGATGCAAAGGAAGAAGAACAAGTGAACAGTCCTCAAGAAAATGCTGCAGAGGCAAGCTCATCTCAGCCTACTTCACCTAAGAGCCCCACCGTGGTTGCAGTGAAAGCAGAGCCGGCCAGTCCCACCCCAGGTTCTAGTCCTGCACATTCTGGAACAGGGGGTTCAGTTCTCCCTGGAGGAGCAGTGTTCTTGCCGCAGTACATGTTTAATTCTGAGGCGGCCATAATGCCCCAGGCATCTGAGATTCTGGCTAAGATGTCTGAGATGGTGCACAGTAGACTTAAACAGGGACAAGGACCAGCAGCTGCACAGCAGAGCTTCTACCCACCAGGCTCTCCTGCCAGCGTTCACAAGGGAGCTACCTGCTTCGAATGTGACATTACCTTCAACAACATTAACAACTTCTATGTCCACAAGAGGCTTTACTGCTCCAGCAGGCATCAACAAGGAGAGACTGGAGGCCTTGTGAAGGAAGGGGCTGTTACTGCAGCTGCTCCTCCTGTTTCCCACGCTGCTTCACCCCAGGCCAGACCAGTCAGCCGTGCAGCTTCAGCCTCTCCTAGCTGCCCTGACCCTGCACCAGGAGGAACGGCCTCGGAACCCAAGGTAGTGGAGGTGAAAATTGAGGATCCAGGGCTGAAAGATGCTACCTGCTCATCGTCCTCAGAGGGAGAGGGACCTGGGGGCGGGCAAGCCAGCGAAGGTAGCCAAAGTCCTAGTGGATCTGCTGAAGACCAAGATGACGACCCCACTCGCACATTTTGCCAGGCATGCAACATTCGCTTCAGCCGTCATGACAACTACATTGTCCACAAGCGATTCTACTGCGCCTCTAGACATGATCCCACCAACCAGCGCCCCCATTCTGGCAAGGCTGCCTTCCTACCCCAACCTATCCGCACACGCAAACGTAAGAAGATGTATGAGATCCACATGGCTCAAACTGAGGCTTTGGCTAATGCCACTACTTTGCCAGCAGGAACTAGTTTGGGGGTTAACCAAGAGGGCTCTTCCGTTGCTCTATTGTCCCAAGTGTCAACTCCTACACGCAGCTCAAGTCCTGAAGGAGAAGGACCCATAGACTTGAGTAAAAGACCCAGACTAAGAGAGAGCCAGAGAAAGGACAGCATTTCTGCATTGCCCCTTTCTGACTACCACAAGTGCACTGCTTGCAGCATTAGCTTCAACAGTATTGAGAACTACTTGGCCCACAAGACCTACTACTGCCCAGCCACTACCCTGCAACCACAAACTATGGAGCAACTAAACCGACTGAAGAGGCCTACCTCCACCTCACCGAAGAACAGAGCCGTGGACCAGCACTCTGATTCCAAAGTGCTTCAAACAGGTAAAACCGCAGCTGTTGCACATGCTGTACCTGGCTCAGAGTCCACCCCTCCACATGTGCAGGGAGCAAAGACCCCCAGCACCTCTCCAGTAGTGTGTCCCTACTGCCCCCCCAACAAACTGCTAACCTGTGATCTGATGGAGCATTTTAAAACGACTCATGGTCTGGTTCTTACACTACAGCAGCATCCTGAGACACAGTCCACTGGAGTCAGTCCCAGTCCCAGCCTTAGCCCACGAGAAGGAGCCCCTCTCACCCCTCCTAAACCAAGCTCCCGCCCCCGTAAGGACAGCCTGAATGGTCGAAGCATCAAGCTGGAAGCAACCTCTCCTTCCCCACCTGTTCTTAATGGAAGTTCACTAGAATCTGTGGGATCTAGGTCTCCAAAAACTGCCCCGCCAGCTCTTTCCCCTAAAGGAGTAACTGTGTCACCTGTGCCTGAAGCTTTAAGAGAGACGGGGCAGCTCAGCCACACCCCATTGCCCAGTGTCCTCCCTGAAAAGGCAGCCCTTGCTATTAGCCACACCATTACAGCTCCACCTAAAACACCACTCGCCTCTCCTTTACAAAATGGGAACACACGCTATTGCCGGCTGTGCAACATCAAATTCAGCAGCCTCTCCACTTTCATTGCACACAAAAAATACTACTGTTCCTCTCACAGTGCCGAACATGTCAAGTGAACCCTCTGCTCAGTCAATTCTGCCATTACTCTCATGCATAGAAGTGCCAATCACGGCACTGCCCGACCTGATCTGGACAGAGCATGATAGTGGGACTGTTACTAGCCAGATACTGAGGTCTTCATGCCGACCATGCTATCTGGTGTTGTTACGATGGTAACTTATTACACGTTATGGGTCAAGTTTGTATTACACTAAGAGATGAGACTACCTGCACACATATTGTGCCCCGCTGACCTATTCCCACAGTTTAGAATCTGCTGATGGAAGGTAACATTTTGCCCTTTAATTAGCTGTTTTAATCACTCCTGTGTTTcatgttcattttaattaatgatgGCAATGTATATTGGTAAAAATTGTTTGTCTGAGCcatttttggtttcttttgtttGAATTCGCTGGGGCCAATTCTGACCCCTAGTGGATGTCTCGCTATCGAACCTGGTCTGCAGATTTTTGTCAGTACACTGTTTAGATATAAGAAGAGTAAATAAAAGAacctgattaaaataaataacatcagGTTACCAGCTGAATATGAAAGGTTTTGATTGATACTAAAATGTGAAGAAACTATTTATGTTTTCAGTCCTTATCCATTTCACGTGAGTTAAGTTCTACCTAGTTTTGTTTTCATACTGTCAAAAGGAATTTCAATCTTTAGTGTGATGTATTTTCTTGGTTCTTTCATATGAAAATGTGTCATATTCGACTTTTGTGTTGATCATTGGGACTTGAGAAGTAATTCTGTAAGTGTTGGTCTGGTAAGGGAGAAGACGGCACACAACTGTACTGTCTCAGTATTTGGTCATGGATGGATGTGCATTGCGTGTCTAAGGACTGTCACAGGCTTTAAGGGTTTGGATTTCAGACAGTGTTCAATGCTTGTTGTGTTTCTAGTCACCAGCTCACCTTTGTCTCTGCCTCTACCACAAAACCCTGCACTGGTTCAAATCCAAAACCCCTTTTAACCTGCAGAAGAAGTGCCATCTGTACTCTAGACAAACTAT

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0007507 heart development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0030219 megakaryocyte differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0001085 RNA polymerase II transcription factor binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-050419-238 Predicted to enable DNA binding activity; RNA polymerase II-specific DNA-binding transcription factor binding activity; and metal ion binding activity. Acts upstream of or within heart looping and hemopoiesis. Predicted to be active in nucleus. Is expressed in several structures, including intermediate cell mass of mesoderm; lateral plate mesoderm; myeloid cell; otic vesicle; and pericardial region. Orthologous to human ZFPM1 (zinc finger protein, FOG family member 1).

Ensembl:

ensembl_id ENSDART00000192075

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026958 lncRNA downstream 893086 16372210 ~ 16377341 (-) True XLOC_013329
TCONS_00026348 lncRNA downstream 962490 16258787 ~ 16307937 (-) False XLOC_013327
TCONS_00027284 lncRNA downstream 962494 16296881 ~ 16307933 (-) True XLOC_013327
TCONS_00027282 lncRNA downstream 1004537 16251074 ~ 16265890 (-) False XLOC_013327
TCONS_00026959 lncRNA upstream 92030 17491321 ~ 17492706 (-) True XLOC_013345
TCONS_00026394 lncRNA upstream 308667 17707958 ~ 17712667 (-) True XLOC_013348
TCONS_00027285 lncRNA upstream 378236 17777527 ~ 17786790 (-) True XLOC_013349
TCONS_00027286 lncRNA upstream 712703 18111994 ~ 18113888 (-) True XLOC_013351
TCONS_00026400 lncRNA upstream 1151917 18551208 ~ 18555561 (-) True XLOC_013354
TCONS_00026378 mRNA downstream 122624 17076680 ~ 17147803 (-) False XLOC_013341
TCONS_00026377 mRNA downstream 122624 17076680 ~ 17147803 (-) False XLOC_013341
TCONS_00026380 mRNA downstream 122827 17079187 ~ 17147600 (-) False XLOC_013341
TCONS_00026381 mRNA downstream 125316 17079987 ~ 17145111 (-) True XLOC_013341
TCONS_00026379 mRNA downstream 183289 17079187 ~ 17087138 (-) False XLOC_013341
TCONS_00026385 mRNA upstream 9179 17408470 ~ 17415609 (-) False XLOC_013343
TCONS_00026387 mRNA upstream 13947 17413238 ~ 17415580 (-) True XLOC_013343
TCONS_00026388 mRNA upstream 84266 17483557 ~ 17485419 (-) True XLOC_013344
TCONS_00026389 mRNA upstream 112704 17511995 ~ 17513426 (-) True XLOC_013346
TCONS_00026390 mRNA upstream 117278 17516569 ~ 17531483 (-) False XLOC_013347
TCONS_00026341 other downstream 1394647 15875662 ~ 15875780 (-) True XLOC_013321
TCONS_00026338 other downstream 1660190 15578502 ~ 15610237 (-) True XLOC_013318
TCONS_00026339 other downstream 1682226 15588087 ~ 15588201 (-) True XLOC_013319
TCONS_00026322 other downstream 2234158 15036151 ~ 15036269 (-) True XLOC_013308
TCONS_00026312 other downstream 2399291 14866383 ~ 14871136 (-) True XLOC_013303
TCONS_00026386 other upstream 12579 17411870 ~ 17415589 (-) False XLOC_013343
TCONS_00026401 other upstream 1169950 18569241 ~ 18569322 (-) True XLOC_013355
TCONS_00026402 other upstream 1178183 18577474 ~ 18577549 (-) True XLOC_013356
TCONS_00026403 other upstream 1178523 18577814 ~ 18577894 (-) True XLOC_013357
TCONS_00026408 other upstream 1296916 18696207 ~ 18701764 (-) True XLOC_013360

Expression Profile

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