RNA id: TCONS_00026441


Basic Information

Item Value
RNA id TCONS_00026441
length 813
lncRNA type retained_intron
GC content 0.45
exon number 3
gene id XLOC_013375
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 19451070 ~ 19456269 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCTTCCGTGGCCGCCATCGAGTTAGGAGCGTGGTTCCTGGCGAGCCGTGAAAACTTACAATAATGGCTTGTGCCCGACCGTTAATCTCGGTCTACTCCGAGAAAGGGGAGACATCTGGAAAAAATGTGGTTATGCCAGCAGTGTTCAGGGCTCCCATCCGCCCTGATATTGTGAACTTTGTGCACACCAACATGCGCAAGAACAAGCGCCAGCCCTATGCTGTCAGCGaactggccgGTCACCAGACCAGCGCTGAGTCCTGGGGCACAGGAAGAGCTGTTGCCCGTATCCCCCGTGTGCGTGGTGGTGGTACTCATCGCTCCGGCCAGGGTGCTTTCGGAAATGTATCCTCAAATAACTAAATTTGACTTGAGCAACACTTGCTGTGATGGTGTAATTTGCGTCCTACTCTACGCACAGCGACAGTTGCCTGCTGTCTTATGCTGGTGTGGAAGGTTGACGATCATTGAGTCTGAGCAGGTTAATGTATGGATGCGTCTTTGAAGTTTTCAAGGCCTGTGCTCACACCAACACAAAAAttctattagattttttttttgagaggatATGAATTGCAGCAGATATAGTTTCAACTGTTACTAGTTTGTTTACAGTTGCATTCACTTTAATACAAACAATTctgcttttttttctcttgttgCATACTTGTAGACAACTCAGTCAAAtagtgtacaatttttttttttttttccttcccaaAAAATGGCATTTAGATATTTGTATTACCTGTGGTGTTTATTAAAGAACTCAGTCAAGCGCTGATTCTGGATAAGTGGTTTGCTGAAATGCA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-9034 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in digestive system; endodermal cell; and eye. Orthologous to human RPL4 (ribosomal protein L4).

Ensembl:

ensembl_id ENSDART00000141224

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026439 lncRNA downstream 415 19452614 ~ 19453739 (-) False XLOC_013375
TCONS_00027292 lncRNA downstream 342238 19110047 ~ 19111916 (-) True XLOC_013371
TCONS_00026960 lncRNA downstream 575430 18876390 ~ 18878724 (-) True XLOC_013366
TCONS_00027291 lncRNA downstream 632784 18815654 ~ 18821370 (-) False XLOC_013359
TCONS_00027290 lncRNA downstream 660889 18787384 ~ 18793265 (-) False XLOC_013363
TCONS_00027293 lncRNA upstream 427391 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00027294 lncRNA upstream 683872 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00027295 lncRNA upstream 829465 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026961 lncRNA upstream 849284 20305484 ~ 20319795 (-) True XLOC_013388
TCONS_00026461 lncRNA upstream 1141864 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00026432 mRNA downstream 48538 19143437 ~ 19405616 (-) False XLOC_013372
TCONS_00026431 mRNA downstream 48538 19143437 ~ 19405616 (-) True XLOC_013372
TCONS_00026430 mRNA downstream 103362 19143437 ~ 19350792 (-) False XLOC_013372
TCONS_00026428 mRNA downstream 350225 19045126 ~ 19103929 (-) False XLOC_013370
TCONS_00026446 mRNA upstream 7225 19463425 ~ 19484919 (-) False XLOC_013382
TCONS_00026445 mRNA upstream 7225 19463425 ~ 19484919 (-) True XLOC_013382
TCONS_00026447 mRNA upstream 31502 19487702 ~ 19491162 (-) True XLOC_013383
TCONS_00026449 mRNA upstream 356408 19812608 ~ 19819812 (-) True XLOC_013385
TCONS_00026450 mRNA upstream 979621 20435821 ~ 20458840 (-) False XLOC_013389
TCONS_00026440 other downstream 1273 19452751 ~ 19452881 (-) True XLOC_013379
TCONS_00026438 other downstream 1876 19452210 ~ 19452278 (-) True XLOC_013378
TCONS_00026437 other downstream 2217 19451870 ~ 19451937 (-) True XLOC_013377
TCONS_00026436 other downstream 2503 19451582 ~ 19451651 (-) True XLOC_013376
TCONS_00026434 other downstream 31026 19423011 ~ 19423128 (-) True XLOC_013374
TCONS_00026448 other upstream 85902 19542102 ~ 19542231 (-) True XLOC_013384
TCONS_00026456 other upstream 1085650 20541850 ~ 20559990 (-) False XLOC_013392
TCONS_00026460 other upstream 1128890 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026464 other upstream 1177589 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026468 other upstream 1389990 20846190 ~ 20846313 (-) True XLOC_013398

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU92141 False 1055 lncRNA 0.47 3 CI01000013 4556868 ~ 4558903 (-)
striped catfish (Pangasianodon hypophthalmus) TU92141 True 301 lncRNA 0.34 2 NC_047599.1 5493317 ~ 5548165 (-)
bowfin (Amia calva) TU92141 True 224 lncRNA 0.49 1 CM030128.1 37015950 ~ 37016173 (-)
mexican tetra (Astyanax mexicanus) TU215382 True 1821 lncRNA 0.47 9 NC_035914.1 17173067 ~ 17177192 (+)