RNA id: TCONS_00026449


Basic Information

Item Value
RNA id TCONS_00026449
length 1562
RNA type mRNA
GC content 0.44
exon number 10
gene id XLOC_013385
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 19812608 ~ 19819812 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACGCGGAAGCAAGTTGAGGTTAGAGGTGAAAGGTTTCCTTCAGGAGGTTGACAGCTGTTGCTAACGTGCTACCTTCATTGGGAGCTATTTTGAATTGTTCCAAGGCTTAAAATGGCAGATGATCAAGGAGATGAAGCACCTACCCTACCTTGTATCTTAGTCACAAGTTGTGATTCCAACTTTAAAGAAGAGGAGCTCATTAGACAGATTTTGAGCTCAGAATCACCACCGCAGCCTAACAGAATAGAAGAAAGAGTTTCCTGGTATCCATGGACGATCAACAACAAATACTACACCGCAAACGTCAGCCTATGTGTCGTATCAAGTACATTCGACATGAATGCTGAGGTGGCCCGGTCTATGCAAGCGTTCATCATTTATTTTGACAGCAAAACTAAAGACAGCCTTAACAATGTCAACTCCTGGTTATCAGTAGTGGAGGAACTGGCTCCAGAAGTGCTGATCCTAGTGTGTGACCATGTGTGCGACAGcgatgaggGTGTTAGCAGACAAGATGCCCAGCAATGGTGTTTGGCCCATGCGTTTGAATTAGTAGAACTTAACCCACAAGATCTACCCGATGAAGATgATGACTTTCCAGAGTCCACTGGGGTAAAAAGAATCATCCAGGCCCTCAATGCCAACGTGTGGTCCAGCGTTGAGATGAAAGATGAACACAGTCAGGGTTTCGGGCTAATGAGCAGTCTGGTGGCTTCCCGTCACAACAACCCACGGCCCAGTCAAGAAACACTGtCCTCTCATTCCCCATCCAACAGTACAGATGAAGGCACTGAGAGCCAGAGGGCAGAGAATAACCAGAGTAATACAGTAGATACAGCAGTCGATCCCATGATTGACATAGACATTCAGGAGCTGGCTAATCTTACAGCTGGAGACCCAGATGTGGAGAATTTTGAACGACTCTTTACAAAGTTGAAAGAAATGAAAGataaGGCCTCTTCATTGCCACATGAACAGAGGAAAGTACATGCAGAAAAGGTTGCTAAAGCGTTTTGGATGGCTATTGGTGGAGACCAGGATGAGATTGATGGTTTGTCATCAGGGGAAGAGAGTTAAAGACCAGTGACTTTTAACCAGCCTCCACTGTTGATACTCAGCCCACCTTTTGGACCCTCAATCACCCCAAATCCGCCCAGTCCAGAGCTAAGATCCAGTAATGAGGAACACGCAAGAATATGGACAACAGCAGCATCATACTGCTTTTACTACTGTATTTTCTCAACACCCCAATCAGGCAGTAGAAATCAGTATTGACTTTTGGCTTTCAATATTATAAATTCGGAGCCGCTCGACAGGTTGCAGGGTGCAAGATTGTGGTCTTATCCACTTTCTTGCGGTTTTAGTGTAAGTATGCAGCAACAAACAATACTAGGAGGAAGCCTATGGTTCTGTCAAGAGTTGTTGTAAATCAAATGACAGATGGGCTGACAAATGGATcatttttcaacttttattttcATGATGTGACTCACAATTATGGACTATGTTCGAGCATGTCATTAGCTGTTCATCAATTAAAAAGAATGATCTGTAGAATCA

Function

GO:

id name namespace
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040718-120 Predicted to enable GTP binding activity and GTPase activity. Human ortholog(s) of this gene implicated in punctate palmoplantar keratoderma type I. Orthologous to human AAGAB (alpha and gamma adaptin binding protein).

Ensembl:

ensembl_id ENSDART00000060344

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026441 lncRNA downstream 356408 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00026439 lncRNA downstream 358869 19452614 ~ 19453739 (-) False XLOC_013375
TCONS_00027292 lncRNA downstream 700692 19110047 ~ 19111916 (-) True XLOC_013371
TCONS_00026960 lncRNA downstream 933884 18876390 ~ 18878724 (-) True XLOC_013366
TCONS_00027291 lncRNA downstream 991238 18815654 ~ 18821370 (-) False XLOC_013359
TCONS_00027293 lncRNA upstream 63779 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00027294 lncRNA upstream 320260 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00027295 lncRNA upstream 465853 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026961 lncRNA upstream 485672 20305484 ~ 20319795 (-) True XLOC_013388
TCONS_00026461 lncRNA upstream 778252 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00026447 mRNA downstream 321446 19487702 ~ 19491162 (-) True XLOC_013383
TCONS_00026446 mRNA downstream 327689 19463425 ~ 19484919 (-) False XLOC_013382
TCONS_00026445 mRNA downstream 327689 19463425 ~ 19484919 (-) True XLOC_013382
TCONS_00026435 mRNA downstream 356339 19451070 ~ 19456269 (-) False XLOC_013375
TCONS_00026432 mRNA downstream 406992 19143437 ~ 19405616 (-) False XLOC_013372
TCONS_00026450 mRNA upstream 616009 20435821 ~ 20458840 (-) False XLOC_013389
TCONS_00026451 mRNA upstream 616480 20436292 ~ 20458412 (-) False XLOC_013389
TCONS_00026452 mRNA upstream 621566 20441378 ~ 20444296 (-) True XLOC_013389
TCONS_00026453 mRNA upstream 640076 20459888 ~ 20466061 (-) True XLOC_013390
TCONS_00026454 mRNA upstream 696715 20516527 ~ 20532339 (-) True XLOC_013391
TCONS_00026448 other downstream 270377 19542102 ~ 19542231 (-) True XLOC_013384
TCONS_00026444 other downstream 357367 19455144 ~ 19455241 (-) True XLOC_013381
TCONS_00026443 other downstream 357741 19454800 ~ 19454867 (-) True XLOC_013380
TCONS_00026442 other downstream 358025 19454486 ~ 19454583 (-) True XLOC_013375
TCONS_00026440 other downstream 359727 19452751 ~ 19452881 (-) True XLOC_013379
TCONS_00026456 other upstream 722038 20541850 ~ 20559990 (-) False XLOC_013392
TCONS_00026460 other upstream 765278 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026464 other upstream 813977 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026468 other upstream 1026378 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026472 other upstream 1201099 21020911 ~ 21024571 (-) True XLOC_013400

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_04344339_04347938.mRNA True 1144 mRNA 0.44 6 CI01000013 4344339 ~ 4348083 (+)