RNA id: TCONS_00026454


Basic Information

Item Value
RNA id TCONS_00026454
length 3450
RNA type mRNA
GC content 0.44
exon number 15
gene id XLOC_013391
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20516527 ~ 20532339 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTCTGTCAgttatcaaatattattattttttcagatCATGATAGTTAAGTTGTAAAGAATCTGGCGAAAAATCTTGGTTACCCGTACCCTGTTTACCCAACTTAACAGCTATGGAGGTTGAAAATTTCGTTTCAAAAACTCTTGAGCTCCTACAAGAAGAGAGAGAAGCTGAACTGGAAGAAACACGCGCATGGCAGGAGAATGTGTCTCTCAAGAATCTACAGCACAAAGGAGTGTGTCTGATGAAACTTCAGATCGGAAGCCAGCACACTGGAATGTATGGCAGACTTCTAGTCATTTTTGAACCCAGGAAATGCATAGGGCTCTCAGTTCTACCCAGCAACACTTTTGGACCTGGTGATATTATAGGCTTGTATCAGGCAGAGGGTCAGGCTCTGCCTACTCAGTTGGGGTCAGGTGTGGTGACTCGTGCTACTCAAGCATCTCTGACGGTGGCTTTTGATGACACACAGGATGGTACTAATTTAGACAGAGATGGACTCTACAACCTAATGAAACTGGCAAATGATGTGACCTACAGGCGGCTGTCAAGTGCACTAAAGTCTTTAAATGGATACAGCAACGGTCCTGCATCTCACCTGATCAGTGTTCTTTTTGGTTACTCTCAACCAGGGATCTTATCACATCTGTATGCATTGGAATTTAACAACACCAAGTTAGATGATTCTCAGAAAGAGGCTGTGTCGTTTGCAATATCTCAAAAAGATGTTGCAATCATACATGGACCACCAGGCACTGGCAAAACTACTACAGTGGTTGAAGTGATCCTGCAGGCagtgaaacaacaacaaaagGTCTTGTGCTGCGCTCCTTCAAATGTGGCTGTTGATAACTTGGTGGAGCGTCtggcgaagaataaggtcaagGTTTTAAGACTGGGTCACCCAGCACGTCTGCTCGAGTCTATTCAGAAACACTCGCTGGATGCGGTCCTTGCACACAGTGACAACACCAACATCATTTCTGATATTCGCAAAGACATGGACAAAGCGTTTAATGAAATTAAGAAGGCACGCGACAAAGGCCAGCGGAGCAATCTGAGACGGGAAATCGGGGAACTGCGGCGAGAGCTGAGGACCAGAGAGGAAACTGCTATCAGTCAGATCCTGAAAAGAGCCGATGTTATTCTAGCAACGAACACTGGAGCCTCTGATGACGGTCCTCTTAAACATCTTCCTAATGATCATTTTGACCTGGTGGTGATAGATGAGTGCGCTCAGGCTCTGGAGAGCAGCTGTTGGATCGCTCTGCTTAAAGCACGCAAATGTATACTGGCTGGGGATTACAAACAGCTGCCGCCCACTATCAAATCACAGAGTGCTGCATCTAAAGGCCTGTCTGTCAGTTTAATGGAGAGGCTGATCAAGAAATATGGAGACTCGGTGGTTCGAATGCTGACCACACAGTACCGTATGAACAGTGCCATCATGCAGTGGGCTTCAGAGCAGATGTATCAGGGAAAACTCATTGCACATCCTTCAGTGGAGAAGCACTTGCTTAGAGACCTGGCAGGTGTTGCGGATGTTGAGGAAACCAGAATTCCTCTTCTGCTCGTTGACACTGCAGGCTGTGGACTGAATGAGATGGAGAACACAGATGAGCAGTCCAAAGGGAATCAAGGAGAAGTGGATATTGTGGCTCTTCATATCAAAGCTCTTACCGAGGCTGGAGTTCAAGTCAAAGACATTGCGATTATTGCTCCCTATAATCTTCAGgtggaTCTTTTGAGGCAGAAACTGTCCCATAAATATGCAGAGCTGGAAATTAAGTCTGTTGATGGCTTCCAGGGCAGAGAGAAGGAGGCAGTGGTGTTGTCATTGGTCAGATCCAACAGGAAGGGTGAGGTTGGCTTTCTTGCTGAAGACCGAAGGATCAATGTGGCTGTGACTCGTGCCAGACGGCAGCTCGTTGTGGTTTGTGATTCTCAAACGGTTCGAAACCACGACTTCCTCAAATCACTAGTGGACTATATGTCTAAGCATGGAGAACTTCGCACCGCCTTTGAGTACCTGGAAGACTGTGTAGCGCAGAATTACACTCGTGATGAAAAGGACAAACAGAACAAAGGTAAAGACACCACATCCGCAAAGCAGAAGACCAAGAAGCAGGACAAGAAGCCAGAGCAGGAACACAAGAAAAGtgcaaacaacaaaaacagtgGAGCCAATCAGTCCGGTGTTCATCATAATAACACCAATTCACACCATCCTAAACCCAAAGATGCAGATCAGACGCAAAGTAAAAGAAAGGAGATCAAGGAGCAACTTTTGAACTTTCTTAAAGATCCAGACAAGACAGAACTAGAGTTTCCTTCCACTTTAAATTCCCATGATCGTCTACTGGTCCATGAGCTCTCTGAAGAAATTGGTTTGAGGCACGAAAGCCAGGGAGAAGGGAAAAGCCGCCACATCACTGTGTCCCGGTCTCCATCAGGACTCGGTAATGAGCCTAAACCTGATAAACCAGATGAAGCCCCATGTACAGTTGCAAATGTACAAGAAGAGTCACCAAATAAACCCTCGCAGCCAACCGTTGATCTGAAAAGCCTACATTTGGAGCGCATGCGACGAGAGCAGGAGAAACGAGAGGagaaaaaacagcaaaaacaacagAGTGCCAGACCGGAACCAAATTTTACTGCTAGTAAAAGCCAGTTCGTTAAGAAACCTAAAGGAACTTCCAAAGGAACTTCAAAGATAAAAGCAGGAGCCACAGATATTGCTGCGGCTGCCAATGGAGATGATGATTTTGATGCTCTCATCAATGCTGTGGTTAAAGCAGAAAGTGTGTGTGGTTTTGTGAAATGCAAAGCCAGTGTGCTGACGCTAGGACAACTCTGCATTTACTGTAACAGACAGTACTGCTTGAGTCACCATATACCCGAGgTTCACGGATGTGGAGACAAGGCAAAATCTCAGGCTAGAATGAGGATAAGCAAAGAAGGAGTGCTCTACGCAGGAAGTGGACAGAAGGACAAATCAGTGGATCCAAACAAAAAAGCATATCTACAGAGAAAACTAGACTCTAAACTCAAAGATATGGTGTCACagagaaaaacaaaagccaaagaCAAAGAAAACTGAAATTCAATGAGACTCTTTTGATGCTTTTTTAATTGAAATGTGCTGGTAATTTACTTGAAAGAAAATGTATACAggaatgtataatgtatatagGAAGATTTCCTCGCTGTAAGTTTAGGTGATTATTTATTACAGATACACACTGGCATGTTGAAATATGGGTTTCAGAATGACTTAAAATACACACTCTAATGCTAGTCTGAATCCCTGCACAAGATTTATGTCTTGCAGAATTGTTGTTGAGAGCTTTGGGGGttgcttttctttctctctcagtTATTGATGCGTTATTATTTATGTCATTTATAATCTTTCTAAAGAAAGCCGGTTAAGCAGAgcctttg

Function

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis
ko03012 Translation factors

ZFIN:

id description
ZDB-GENE-050419-258 Predicted to enable 5'-3' DNA helicase activity. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2S and distal spinal muscular atrophy 1. Orthologous to human IGHMBP2 (immunoglobulin mu DNA binding protein 2).

Ensembl:

ensembl_id ENSDART00000060291

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027295 lncRNA downstream 196654 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026961 lncRNA downstream 196732 20305484 ~ 20319795 (-) True XLOC_013388
TCONS_00027294 lncRNA downstream 367430 20140072 ~ 20149097 (-) True XLOC_013387
TCONS_00027293 lncRNA downstream 632233 19883591 ~ 19884294 (-) True XLOC_013386
TCONS_00026441 lncRNA downstream 1060327 19454154 ~ 19456200 (-) False XLOC_013375
TCONS_00026461 lncRNA upstream 65725 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00026963 lncRNA upstream 632487 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA upstream 632487 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026498 lncRNA upstream 1399914 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026499 lncRNA upstream 1411866 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00026453 mRNA downstream 50466 20459888 ~ 20466061 (-) True XLOC_013390
TCONS_00026450 mRNA downstream 57687 20435821 ~ 20458840 (-) False XLOC_013389
TCONS_00026451 mRNA downstream 58115 20436292 ~ 20458412 (-) False XLOC_013389
TCONS_00026452 mRNA downstream 72231 20441378 ~ 20444296 (-) True XLOC_013389
TCONS_00026449 mRNA downstream 696715 19812608 ~ 19819812 (-) True XLOC_013385
TCONS_00026455 mRNA upstream 8977 20541316 ~ 20560007 (-) False XLOC_013392
TCONS_00026457 mRNA upstream 10838 20543177 ~ 20560059 (-) True XLOC_013392
TCONS_00026458 mRNA upstream 49346 20581685 ~ 20608300 (-) False XLOC_013393
TCONS_00026459 mRNA upstream 51591 20583930 ~ 20608025 (-) False XLOC_013393
TCONS_00026462 mRNA upstream 66104 20598443 ~ 20608025 (-) True XLOC_013393
TCONS_00026448 other downstream 974296 19542102 ~ 19542231 (-) True XLOC_013384
TCONS_00026444 other downstream 1061286 19455144 ~ 19455241 (-) True XLOC_013381
TCONS_00026443 other downstream 1061660 19454800 ~ 19454867 (-) True XLOC_013380
TCONS_00026442 other downstream 1061944 19454486 ~ 19454583 (-) True XLOC_013375
TCONS_00026440 other downstream 1063646 19452751 ~ 19452881 (-) True XLOC_013379
TCONS_00026456 other upstream 9511 20541850 ~ 20559990 (-) False XLOC_013392
TCONS_00026460 other upstream 52751 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026464 other upstream 101450 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026468 other upstream 313851 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026472 other upstream 488572 21020911 ~ 21024571 (-) True XLOC_013400

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_03902606_03908849.mRNA True 3263 mRNA 0.45 15 CI01000013 3902606 ~ 3909058 (+)