RNA id: TU57206


Basic Information

Item Value
RNA id TU57206
length 385
lncRNA type sense_over
GC content 0.47
exon number 2
gene id G51193
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 47015304 ~ 47067386 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcggtcatgtttccggttgccttgccatgattaaaagcagtggttcgcgttttcagttttgtgcgaatgctgccatcaatccatggtttctggttggggaaggttttaatagtcaccgtgggtacaacatcaccgatgcacttgctaataaactcgctcaccgaatcagcgtatacatcaatgttgttgtctgaggctatccggaacatatcccagtccacgtgatcgaagcaatcttgaagtgtggaatcagattggtcggaccagcattgaacagacctgagcacgggcgtttcctgttttagtttctgtctataggctgggagcaacaaaatcgagtcgtggtcagatttgcgactcgttaatcataagacatacacccccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57194 lncRNA downstream 32931 46977457 ~ 46982373 (-) True G51181
TU57186 lncRNA downstream 46159 46968445 ~ 46969145 (-) True G51175
TU57175 lncRNA downstream 47916 46924028 ~ 46967388 (-) True G51165
TU57170 lncRNA downstream 103345 46900164 ~ 46911959 (-) True G51160
TU57141 lncRNA upstream 7162 47074548 ~ 47123334 (-) True G51137
TU57258 lncRNA upstream 41749 47109135 ~ 47138083 (-) True G51229
TU57266 lncRNA upstream 61853 47129239 ~ 47163592 (-) True G51236
TU57248 lncRNA upstream 75138 47142524 ~ 47242553 (-) False LOC110524061
TU57249 lncRNA upstream 75138 47142524 ~ 47242553 (-) False LOC110524061
XR_005051909.1 mRNA downstream 40615 46972769 ~ 46974689 (-) True LOC118964694
XR_005051913.1 mRNA downstream 67778 46946048 ~ 46947526 (-) True LOC118964697
XR_005051918.1 mRNA downstream 112911 46901321 ~ 46902393 (-) False LOC118964698
XM_036978815.1 mRNA downstream 175751 46817056 ~ 46839553 (-) True LOC110524028
XM_036978804.1 mRNA downstream 175752 46817056 ~ 46839552 (-) False LOC110524028
XR_005051906.1 mRNA upstream 23852 47091238 ~ 47093901 (-) True LOC118964691
XR_005051907.1 mRNA upstream 50468 47117854 ~ 47119664 (-) True LOC118964692
XR_005051921.1 mRNA upstream 77036 47144422 ~ 47145496 (-) True LOC118964699
XR_005051910.1 mRNA upstream 104028 47171414 ~ 47172690 (-) True LOC118964695
XR_005051912.1 mRNA upstream 139117 47206503 ~ 47207921 (-) True LOC118964696
TU55801 other downstream 1065353 45948958 ~ 45949951 (-) True G49962
TU55610 other downstream 1294180 45720805 ~ 45721124 (-) True G49774
TU52237 other downstream 3886275 43038728 ~ 43129029 (-) True tspan9a
TU47067 other downstream 7993279 39021805 ~ 39022025 (-) True G41868
TU45924 other downstream 8823568 38187488 ~ 38191736 (-) True G40768
TU57327 other upstream 221553 47288939 ~ 47289681 (-) True G51285
TU57725 other upstream 310255 47377641 ~ 47378543 (-) True G51649
TU57798 other upstream 474990 47542376 ~ 47561209 (-) True LOC110524104
TU59011 other upstream 1226722 48294108 ~ 48304136 (-) True LOC110524264
TU59630 other upstream 1916799 48984185 ~ 48985917 (-) True LOC110532382

Expression Profile