RNA id: TU65705



Basic Information


Item Value
RNA id TU65705
length 353
lncRNA type intronic
GC content 0.49
exon number 2
gene id G59104
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 53830747 ~ 53835745 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtcctttcccttcaccctgtctccctctgctggtcgttgttaggttaccttttctcccccgctttcccccagctgttccttgtctcctcttgactacctcgtcaccccttctcccacctgttccccttttccctctgattagtcccctatatctctctctgtttttgttcctgtccttgtcggattcttgtttgttgtgtttcatgcctgagccagactatcgtcatgtttgctgtaaccttgtcctgtcctgtcggaatctgccggtctatctgagcctacctatgtttggttattaaagaagctctgtttaagttagttcgcttttgggtcctcattcacgcacctaaCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU65538 lncRNA downstream 70689 53759692 ~ 53760058 (-) True G58954
TU65506 lncRNA downstream 195781 53632654 ~ 53634966 (-) True G58926
TU65423 lncRNA downstream 232951 53597123 ~ 53597796 (-) True G58850
TU65419 lncRNA downstream 239284 53590934 ~ 53591463 (-) True G58846
TU65392 lncRNA downstream 267537 53562953 ~ 53563210 (-) True G58819
TU65712 lncRNA upstream 20821 53856566 ~ 53917269 (-) True G59110
TU65783 lncRNA upstream 119570 53955315 ~ 53955541 (-) True G59172
TU65792 lncRNA upstream 135782 53971527 ~ 53971753 (-) True G59178
TU65811 lncRNA upstream 138460 53974205 ~ 53974501 (-) True G59196
TU65812 lncRNA upstream 138898 53974643 ~ 53974863 (-) True G59197
XM_036980333.1 mRNA downstream 8422 53813985 ~ 53822325 (-) True LOC118964895
XR_005051403.1 mRNA downstream 28077 53801029 ~ 53802670 (-) True LOC118964334
XR_005051393.1 mRNA downstream 50565 53778541 ~ 53780182 (-) True LOC118964330
XM_036980320.1 mRNA downstream 56203 53761612 ~ 53774544 (-) False LOC110525178
XM_036980313.1 mRNA downstream 56204 53761612 ~ 53774543 (-) False LOC110525178
XR_005051406.1 mRNA upstream 4838 53840583 ~ 53841742 (-) True LOC118964340
XM_036980360.1 mRNA upstream 18115 53853860 ~ 53868089 (-) False LOC110525263
XM_036980365.1 mRNA upstream 18115 53853860 ~ 53868090 (-) True LOC110525263
XR_005051433.1 mRNA upstream 36375 53872120 ~ 53874025 (-) False LOC118964352
XR_005051444.1 mRNA upstream 36375 53872120 ~ 53874025 (-) False LOC118964352
TU65545 other downstream 33733 53791830 ~ 53797014 (-) True G58958
TU65542 other downstream 67851 53761955 ~ 53762896 (-) True LOC110525178
TU65415 other downstream 241977 53588422 ~ 53588770 (-) True G58842
TU65285 other downstream 404431 53425964 ~ 53426316 (-) True G58718
TU65226 other downstream 492360 53334724 ~ 53338387 (-) False LOC110525078
TU66641 other upstream 893386 54729131 ~ 54737244 (-) True G59978
TU67198 other upstream 1234647 55070392 ~ 55070899 (-) True G60516
TU67257 other upstream 1314496 55150241 ~ 55154258 (-) True G60572
TU67299 other upstream 1357552 55193297 ~ 55193723 (-) True G60614
TU67309 other upstream 1367672 55203417 ~ 55203742 (-) True G60624

Expression Profile