RNA id: TU71288


Basic Information

Item Value
RNA id TU71288
length 211
lncRNA type intronic
GC content 0.45
exon number 1
gene id G64342
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 58704178 ~ 58704388 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgaTAATGTTAATTCTTTAGTGAAGTGGATAATTAGGAACTCGAcccgttccactacagccccatcgaagTGGATGGGGACAAGCTcgcccctccatttcctgtaatccacaatcagtTATTTTGTCTTGCTATAATTGACAGAGAGGTTTTTGTCCTAAATCACACTGGCTggtatctgacctcctccctatagactgcatgatcagtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71287 lncRNA upstream 1780 58702155 ~ 58702398 (+) True G64341
TU71285 lncRNA upstream 3373 58700456 ~ 58700805 (+) True G64339
TU71282 lncRNA upstream 7078 58696700 ~ 58697100 (+) True G64336
TU71271 lncRNA upstream 21222 58682743 ~ 58682956 (+) True G64325
TU71270 lncRNA upstream 21984 58681746 ~ 58682194 (+) True G64324
TU71291 lncRNA downstream 7344 58711732 ~ 58711948 (+) True G64345
TU71292 lncRNA downstream 8859 58713247 ~ 58713516 (+) True G64346
TU71294 lncRNA downstream 9941 58714329 ~ 58771034 (+) True G64347
TU71349 lncRNA downstream 135750 58840138 ~ 58840812 (+) True G64394
TU71352 lncRNA downstream 136771 58841159 ~ 58843049 (+) True G64397
XR_005052202.1 mRNA upstream 740355 57961716 ~ 57963823 (+) True LOC110525578
XM_021605791.2 mRNA upstream 766190 57806134 ~ 57937988 (+) False wdr11
XM_036989719.1 mRNA upstream 938780 57622267 ~ 57765398 (+) True LOC110525562
XR_005052200.1 mRNA upstream 982153 57694498 ~ 57722025 (+) True LOC118964920
XM_021605762.2 mRNA upstream 1641327 57035617 ~ 57062851 (+) True vsir
XM_036980882.1 mRNA downstream 103982 58808370 ~ 58838199 (+) False fam160b1
XM_036980886.1 mRNA downstream 104296 58808684 ~ 58838199 (+) True fam160b1
trnaa-ugc mRNA downstream 357419 59061807 ~ 59061880 (+) True trnaa-ugc
XR_002473818.2 mRNA downstream 505618 59210006 ~ 59212175 (+) True LOC110525756
XM_021606181.2 mRNA downstream 579936 59284324 ~ 59299682 (+) False erlin1
TU71284 other upstream 3799 58699296 ~ 58700379 (+) True G64338
TU71261 other upstream 38272 58665334 ~ 58665906 (+) True G64315
TU71238 other upstream 116593 58586858 ~ 58587585 (+) True G64292
TU70900 other upstream 481048 58221522 ~ 58223130 (+) True G63959
TU70899 other upstream 481326 58221522 ~ 58222852 (+) False G63959
TU72488 other downstream 620248 59324636 ~ 59325129 (+) True G65442
TU73321 other downstream 1237098 59941486 ~ 59942064 (+) True G66188
TU75047 other downstream 2610486 61314874 ~ 61315252 (+) True G67806
TU75188 other downstream 3025377 61729765 ~ 61733388 (+) True G67930
TU77508 other downstream 4570575 63274963 ~ 63275296 (+) True G70011

Expression Profile