RNA id: TU102873


Basic Information

Item Value
RNA id TU102873
length 6044
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G93412
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83668523 ~ 83701424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtaaggtctctgtctagcagtgcatttcaaacacagattcaaccatttTGCCTCATAAAGAAGTTCACCAATTggtcattttttaaaaatcaaagcagacattaaatatccctttgagcatggtgaagttatgaattacactttttatggtgtatcaatacacccagtcactacaaagttaAAGACGTCCTTTTTAACTCAGTtgcctgagaggaaggaaaccgctcagagatttcaccatgaggccaatggtgactttaaaaaagttacagagtttaatggctatgactggagaaaactgaggatggatcaacaacattgtagttactccacaatacttacCTGATTGACAGAGCaaaaagaaagaagcctgtacagtataaaaaatattccataacatgctgtttgcaacaaggtactaactaaagtaatattgcagaaaatgtggcaaagcaattcactttttgtcctgaatacaaaatgttatgtttggggcaaatccaatacaacacattactgagtaccactcttcatattttcaagcatagtggtggctgcatcatgttatgggtattcttgATATCATTAAGGATGGGGAGTTTTACAGGATAAAATACAATGGAATGGAgataaacacaggcaaaatcctagagaaaaacctgggatagtctgctttccaccagacactgggagattaattcacctttcagcaggactataacctaaaacacaaggccaaacctacactggagttgcttaccaagataacagtgaatgttcctgagtggctgagttacagttctgaCTTATATCCactttaaaatctatggcaagacctgaaatggttgtctagcaatgatcaacaaccaatttgacagagcttgatacattttttaaatagaaatgggcaaatgttgcacaatccaggtgtggaaagctcttagaggcttacatagaagactcacagctgtaatcactgccaaaggtgcttctacaaagtattgactcaggggtgtgaatagttatgtaaatgagaGATTTCTATATttcatgtttttgctttgtcattatggggtattgtgtgtagatgggtgagaaaaaacatatttaatgcattatgaattcaggctgtaacaaaatgtggaataagccaagaggtatgaatactgacacacagggacacaccaTCTCTGACCTACGTATACACATGAAAAGGGACACATCATGTCTGACCAacgtatataaacacacacatgaacgcCACAGGAggatggtggcaccttaattggggaggacaggctcgtggtaatggctggagtggaatcatttgaatggtatcaaacacatggtttgatgccattccattcactccgttccagccattattatgagccgtcctcccctcagcagcctccactgatcagCGCACAGAgtgatacacacatacacgcagaTATACAAAAGACTATAGTATGGATGTTCTCCTGAGGTGTGACCATCCCACCCTGACCCCACCGTCTCCACACCGTCTAAGACAGGACTATGGACCAACAACCCTCCTTCTTTTTCCCAGGACTTTCTCCAATGGGGCCCGATGAGCCCatagacacctctctctctcgctctctctctctctctctctctctctctctctctctctctctcaccacacacacacagagagtcagaTGAACTTACTCTGCTTCAGAGGTTTCAGTGTTTCTGTTTCGTTGTTTGTTTGTTAGCTTGTATGTTTGGTTTATTGGTTGTACTTCCTGTGAGTCGTGGGCTAAAGCGCCGCCGGATCTCTGGAACATTCTAGAACACTTTGGAACATTTTGGAACATTGAACATTCCAACTACTGCCACCATACCGCTGACAGCAGAGAGCCCGCTAAGGTCTACATGCCCGCCCCTCTGGGTTTGGGTCTGTACTAGTCTGGGCCAGATCAGACCGGATCGTACTGGATTGTATCGGATCTGACCATGCATTGAAGCACTTTTTAGTTCCCACCAACATCCCTCTCAACCCTTTTCTCTTTTAATATGAGTCAAGTTCTTTATAGTATATCCCAGCAAACAGAGGACATCTCTAGGACATTAAGCGATGTTCCCATTAGGTTATTTTTAGGGTTTCAGCAAGACGTTATCCATAAGGGGACATCAGTGCAGGTCCCGGTTTGGTCGCAGTGTAACGTTATAGTACGTTTTTTTTTATGTCCACTAGGGAACTTTATGAACAGGTTCCTGTTTGGTTCTGGCAACCGGGAACTAAACAAAACCTCCACAGGACCATGACGCAATGTCTTGACGACCATGTCGTGATGTTCCCGGGAAGTCCTaaggacacatttttttttgcagtataaATGTGGGAAATTatacagaaacaaaaacaggaaGATTTATGGAAAAATCTTTTGTTTTACATTTGATATTTCtgtccaacacacagacacatacacacctgcCCTCCCTTGGATGACAAAAAAGGAATCGAGAAAAGCAATGAATGATGGGGGGAATGGAATTTTGCCAAAATGATCATTTCCCTTTTCATCTAGAAAAACAAACACTGAAAGTCATTGCTATATATGGCCTACTGGTTATTCAAGCTCTGGGGTTTTTACATCTTGTTTGGGTTGGGTTGGTACAATATTGATACAGCGTTGATACAACCAAAACACAACGTTGGGATAACATCAGATCCAGCCATCCACCTGACATTACCTCCTTCTACCATTGGAACTCTTTAAAGGCTCTGAGAAGAATGTAACGTTTTTAAAACCATTTTCTACCAACCATTCAGTCACAGGAAATTGCTAGATAATCTCCCATGTCAGTCATCATCTTAACATGACCTTTGGAAAACCAACCAATCAGTCATGTTTTTTCTATTGTGTGAATTATACAGTACTTCTGGTATTCCATGTGCAGTTTTTAATAATAATCTGTTGTTAATTATGTTGGTGTAATCATGGGTTTTATGATGCCTTGAGGAAGCTACAGCTTGCTATATTTAGACTGTTATCTCATCctgtcatcctcctctcctctcttcccaagGCAGTTTATAGTGGGTCAATTGAGTTCTCTGATCACACTGATAATGATAATGTAGATGGAAAATGCAGATGGAATTATTAAAATCCTCATTTACATAAGATTATTATTATTATGAGACAACCAATCACCATCATCCACCATCCCCTGACCAGCTCCCTCACCTCAAGCCATGAACTGACCCTCTCTATCTTCAGAGGATACAGCTTTCAAAAACATGGTCTCTATTGGTTGACATGGCCTCTATTGGTTGACATGGCCTCTACTGGTTGACCTGGACTCTACTGGtttacaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaatatgagagaggcctgtaattttcttcataggtacacttcaaccatgacagacaaaatgagattttttttctccagaaaatcacattgtaggatttgtaatgaatttatttgcaaattatggtggaagccactcctgctGTACAGTCAGTTATTGAGACTccggtgtgagagagagacaaacacctgCAACACAACATAAAGTTTTTCAGTCGAGCTAAAGTCTCTATTGCACAGTCAGACAACCTTCCCTTTCTAAGTTACAATGATCAGTCCCTAACTCACCTGTTGTTTGACTAATCATTATTCGATTTAACTTGATGTATCGTTCTTTCTCACATCTGGCATAATGAGGCTTTGATTAGACACATTTATACATTTTTCGATTTCATTTTTCCAAAAGTAATGTCTGATGCTTCTCTCCAGTAAAGTTGCCATATGTTGACAATAGAGACACTTGTTTCACAGAGCCAAAACCTTATGTTGTCATCAATGATATCAGGCAAATGTAACTTGGTAAGAGTCTAATATAGTGTCAAATTCAATCTGCGCAGAATTGCAAGAACATGATTTCTTGACTTAATTACAATACTAAAATCTAAATGCTGAGCAGTGACAGAACATGAACGTGTACAATTGGAACTGTCAGCAGAGCAGTTTGGCGGTGAGGAGCTGACTGGGTCACCATCTAGTGTTTGGAGTAGGGAAGTGCAGTCTGAACACGGGTGTTGTGGTTTCCTCAAGGCAACACTGTGTTCTGGGCTTACAGTCTGTTGTAAGTGCTTTTGTATCTGTGGGAGAACAGCAATGCCAGGGTCCTCTCTGACCTTTTACAACCATTCCAGCAAACACACATTTTTATCAACAGCGTATTTGATACTAGTGTAAACATACACACGACAACAACAGAGGTCCAACCATGACACTTGTACAATGACGACAAACAAAACTAAAATCAGCATTGTTCTTTCAACATCTGATTTCCTGTCATGTAAAGCCCCATTGTATTCTGGGATTTGGTGTCTTAATTTGTATAGAAGTTGGGATTAGAGTTTTGGGTGACAGGTAGCATAGCggctagagcgttgggccagcaactgaaaggttgctggttagaATACCTGaaccgacaaggtgaaaaatctgtatgtgtccttgagcaaggcacttaaccctaattagcTCCAGGGgcactgtactactatggctgaccctgtaaaacaacacatttcacttcacctatctggtgtatgacaatgaaacatgtttttttgtatttgAGAATCATGTTTGGTTATAAAGGGCCTCATGCTTTCTCAGAACCACACACAAATATGTATTAATacatattattattgtattatacaGCTGTGAACTCACACAGTCCTCTGTACGGTGTACATTTTAGGACACCCTCACACAGTCCTCTGTACGGTGTACATTTTAGGACACCCTCACACAGTCCTCTGTACGGTGTACATTTTAGGACACCCTCACACAGTCCCCAAGATGCTCTTTACGATAAGACAGAAAAAGTGCAATTACCTTAGCTGACCTGGTCAATTCTCTAGTACTGTCGCTCTCATCCAGAGGTTGACTCTCTGGAGACATGATGATTATTTCTACATTTTCTGtgtggtatttatttatttttaagaaaAATATTTGTTGCATCAAAAGAGACCCCTTCAAATTGTGATTTTATTCAACTAATACTAGCAGTACGTCTATAGTTCTACCCTCTATAAGTTATTCAACCTGCATTTACAACCACTGCTTTTACCCGATCAATACAATGGATACAAATGATACATCCGTTTATTTTAGTCAGAGAATTATTGAGATTTTCAAATATTAACATTTACATGATTGATAAATTAATTGAAATTATAGATTTTATAATGATGTATAGCTGGCTCCTATAATTCTCTCTTTGAGAGAACATACCTGTTGACTTGTTGATGTTGACCTTTCATGTTTCACCTCAGACTTTTATGTACAGGGCTTTGCTTATCTATTTGATGAGAACAGTTTTTACTGCCAAGCTCTATAATAACTTTGTAACGGCGCCCTTCCATTTTCCCCAGCATTTGCACAATTCTGgcaactttccccaaattccacCCTTTTCCAGATGTCCCGGTTGGAATATTCacagatttctggaaaacctgaccATTTTGGGAAAGTTCCTGGAATACTGAAACCACTAAACCATACTGTGTAACGTTACTCTGGCAGAGGTCTGTCTGTTCATTCAAAGTCATTTAACATGTAAGAGAAAACGCATTTCTCCTGCTGAACATATGTAGCTTAAACAGCCATTGATTGAGGAAAGCCGTTCCGTCCCCCATCATCAGAATGATAACCCTTGTGCTGAGAAAGTGTTACTTGCATAAAACTACAGTGCTTTACTACTGACTGGACTTGAACATAAGACTGTTTCCCTCCTTCATATATCATTCCACATGTTTGTCTGTGAGTTTACCTTTCAATAGTAACTGTATAGAATTTTGGTAAGAAAAAAATGACTTAtgttttaaaaaaagaaatattgatgtgttttgatttgtttcattTCCCATGTTTGAATAAAGTATGTAGATTGAAAAACCAACCAAATAAAAATGACAACCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102936 lncRNA upstream 62647 83605746 ~ 83606906 (+) True G93469
TU102921 lncRNA upstream 142031 83526395 ~ 83527522 (+) True G93456
TU102909 lncRNA upstream 164504 83504333 ~ 83505049 (+) True G93445
TU102908 lncRNA upstream 165689 83503639 ~ 83503864 (+) True G93444
TU102904 lncRNA upstream 168387 83500922 ~ 83501166 (+) True G93440
TU102877 lncRNA downstream 116 83676068 ~ 83718069 (+) True G93414
TU102881 lncRNA downstream 45942 83721894 ~ 83723261 (+) True LOC110530841
TU102988 lncRNA downstream 67231 83743183 ~ 83743415 (+) True G93512
TU102989 lncRNA downstream 67786 83743738 ~ 83744223 (+) True G93513
TU103000 lncRNA downstream 88264 83764216 ~ 83765131 (+) True G93519
XM_036987107.1 mRNA upstream 1882 83511117 ~ 83667671 (+) False LOC110530763
XM_036987108.1 mRNA upstream 1882 83511117 ~ 83667671 (+) False LOC110530763
XM_036987085.1 mRNA upstream 29310 83511117 ~ 83640243 (+) False LOC110530763
XM_036987094.1 mRNA upstream 29310 83511117 ~ 83640243 (+) False LOC110530763
XM_036987101.1 mRNA upstream 29310 83602827 ~ 83640243 (+) False LOC110530763
XM_036987128.1 mRNA downstream 45907 83721859 ~ 83798056 (+) False LOC110530841
XM_036987143.1 mRNA downstream 45907 83721859 ~ 83798056 (+) False LOC110530841
XM_036987134.1 mRNA downstream 45920 83721872 ~ 83798056 (+) False LOC110530841
XM_036987152.1 mRNA downstream 91835 83767787 ~ 83798056 (+) False LOC110530841
XM_036987161.1 mRNA downstream 91836 83767788 ~ 83798056 (+) False LOC110530841
TU102887 other upstream 119963 83511146 ~ 83549590 (+) True LOC110530763
TU102814 other upstream 196329 83472433 ~ 83473224 (+) True LOC110530741
TU102821 other upstream 335977 83333266 ~ 83333576 (+) True G93362
TU102659 other upstream 579621 83088531 ~ 83089932 (+) True G93204
TU101989 other upstream 1487757 82180946 ~ 82181796 (+) True G92575
TU104152 other downstream 369359 84045311 ~ 84048149 (+) True G94463
TU104770 other downstream 706805 84382757 ~ 84410052 (+) False LOC110532822
TU105595 other downstream 1464188 85140140 ~ 85141006 (+) True G95702
TU105730 other downstream 1558869 85234821 ~ 85235394 (+) True G95821
TU106091 other downstream 1961795 85637747 ~ 85638055 (+) True G96133

Expression Profile