RNA id: TU110951


Basic Information

Item Value
RNA id TU110951
length 1200
lncRNA type read_through
GC content 0.44
exon number 2
gene id G99954
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 90101063 ~ 90151194 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTAGACTGACAAGTGGggcaccaacaacaacaaaaaacgaatTCCTGACACAAAATAAGCAATATAGGTGGATGGAATTTCAGTTTTTAGAATGATCAAAATctctatttttttttctctctcgaaatcaccaaaaaatacacaaaaataaATatcGAACCGAGAAATATGCTCCGTTAAGAAACCTTTAagagaaaaataataatttctctCAGTAGTGGAATCACCCTCTAAAAGAGAGGCTTGCATCCCAAGTGGCTCCCTAATCCCTGCATAGTGCACGACTTCAGACCAGAGCTTTATGGGCCCTGATTAAAAAGCtgtacactataaagggaagagTGTTCCATTTGGGATATAGAGTAGTCTAGTCTCGTTGTCCTGCTTCATAGATCATAGCTACAGGATTTATATACGCAGCAACTCTGATTTTGACAACACAACCAGGTAAATAGTGAACCCTTTCCCACCGTCTCAGGTCTCAATCCGTTCCATTTTTAGCAGATCTGCGATTTCAATATTCAAGCAATTGTTCACAATGGAACATAAATGTATGATACTAGATGCATTTCTGACAGTAACATTTTGATGGCCAGATTATCAGATGATAGTTCTCTATGGTGAAACAGAACGCTCTCTTGCTTACAAAACAGAAAAGAATGAAGCAATAATTCACATATTTAAGACAAAAACTAGCAATCTCAccactgtacccccccccccccccccccacctcccactCCCCAGATCCACACGGCAACAATAGAGACAGAATTCCATGCCCCGAAATCCCCAAATCTTTTGCTGTTAGGAGACAAAGATGCTTGCATCCcaagtgacaccctattccctatatagtgcactacttttgacagacCCCCTATGGGTGTCCCTATgagacctggtcaaaagtagtgcactacatagggaatagggtgccatttgggacgcaagcctCAGCCATCATCCCTGTAGTTGTAGGCCAGTGGATCCATCCTGACCAGGTTCTCCGTTTGGGTTCAGTTTCTACCAGATGTATCCTCCGTCGtctgcctccccctcttcctcttcctcctcctcctccgcctcttctccgttctcctccttctcttcctcatcctcccatCCCACGCCACTCCCAAAATCTCCGGAATATCCCAGCAGTTCATCTGGAGCGAGGGATGAAATGAAAAGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111003 lncRNA downstream 5161 90095201 ~ 90095902 (-) True G99987
TU110992 lncRNA downstream 18272 90082488 ~ 90082791 (-) True G99978
TU110958 lncRNA downstream 59267 90040851 ~ 90041796 (-) True G99960
TU110436 lncRNA downstream 129524 89966739 ~ 89971539 (-) False G99604
TU110437 lncRNA downstream 129524 89966739 ~ 89971539 (-) True G99604
TU110955 lncRNA upstream 25590 90176784 ~ 90177309 (-) True G99957
TU111049 lncRNA upstream 46409 90197603 ~ 90199466 (-) True G100023
TU111050 lncRNA upstream 46831 90198025 ~ 90199853 (-) True G100024
TU111080 lncRNA upstream 104621 90255815 ~ 90256156 (-) True G100051
TU111107 lncRNA upstream 157719 90308913 ~ 90310511 (-) True G100076
XM_036988457.1 mRNA downstream 180605 89912298 ~ 89920458 (-) False LOC110519290
XM_036988442.1 mRNA downstream 180613 89912298 ~ 89920450 (-) False LOC110519290
XM_036988448.1 mRNA downstream 180690 89912298 ~ 89920373 (-) False LOC110519290
XM_036988401.1 mRNA downstream 198545 89900338 ~ 89902518 (-) True LOC118966075
XM_036988407.1 mRNA downstream 198559 89900338 ~ 89902504 (-) False LOC118966075
XM_036976557.1 mRNA upstream 236 90151430 ~ 90156318 (-) True LOC110515024
XM_036990051.1 mRNA upstream 331527 90482721 ~ 90498148 (-) True LOC110532927
XM_036988548.1 mRNA upstream 397046 90548240 ~ 90602774 (-) False LOC110531748
XM_036988550.1 mRNA upstream 397046 90548240 ~ 90602774 (-) False LOC110531748
XM_036988559.1 mRNA upstream 397046 90548240 ~ 90602774 (-) False LOC110531748
TU110433 other downstream 136858 89963873 ~ 89964205 (-) True G99602
TU110424 other downstream 143147 89957392 ~ 89957916 (-) True G99595
TU109727 other downstream 811007 89287214 ~ 89290056 (-) True G99035
TU109710 other downstream 848975 89223150 ~ 89252088 (-) True ghitm
TU109555 other downstream 1024825 89075847 ~ 89076238 (-) True G98878
TU111315 other upstream 476339 90627533 ~ 90684839 (-) False G100197
TU111345 other upstream 476774 90627968 ~ 90736095 (-) False G100197
TU111268 other upstream 478478 90629672 ~ 90858972 (-) False G100197
TU111283 other upstream 478478 90629672 ~ 90782397 (-) False G100197
TU111290 other upstream 478478 90629672 ~ 90782397 (-) False G100197

Expression Profile