RNA id: XM_036942482.1


Basic Information

Item Value
RNA id XM_036942482.1
length 4896
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC118938460
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22780044 ~ 22791836 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCCACTGTTGTGTAGAAGACGGAAGCAGATCGGTCGCGGTTTGTGAGTGATTCAATTACAACAAATGGTGTTACAAAAAAAATTGAACATACGTTTTAACCAGTATTTAGGCTAGATAGTAACATTGTGCAACAAGCGTTATACAATATCACAGATCAATCACATATGATAGTTTCTGGATATTTTTCGGACAGTGAAGAGCGCATGCCTTCACGGCCACAAGGTGTTTCTGTCCAGGTGGAGCATCTGAAAATTAGCCATCTTCACTGTTGCAATCAGAACTGAGGTGATCTGCGGAAGTCCTTATGTCGTCATAATTTACCTGCTTATTCTGTCAATAGTTGTAGTAGGTACCATGTCAGACTTCACCATCGATATCCAGCTGACAGAACTAGGGTTCCCTGACATCTTGCAGCCCAGAGAAACAACCTGTGTGAAGGAAACACCATCGCCTTCGGCCTCTAACAATATATCCCCTTTATCCCTGGCTAACCTCCAAACCCCCAGTTCCTCGCCGCCTCCTGCTGCTCTCACCCCCACAGCTGTGGTCCCAGAACTGGTCGATGTAGATCAGCTGGTTTCTGTAGACTCACAGACTGCTTCTACAGTTCAGCAGGTTGCCTCACAGACTGGCACTCATATTACAGTAACCCCAAATCCATGTGGTCCCCCTGAGACACTGACAATACTCTGCCCACCCCCTCCTTCTACACACAAACCTGTGGCAGTGCCACACACTTCACGGCCTGTTAGTCCCATATTGCTACCCAAGAGTTTAGTAAGTGGTCAAAGCAATAGCCTTCACCAAAACCCCAAAATAACTAAAACTGTCCTGATATCTGTGTCTCGTATTGGAGTTGGTACTGTGTTGACGTCTGTACCAGCTACTTCCACTCCCCCTGTTGAACACTTAAGAACCATTACGAATGATTCTGAGCTGCCACTGGCAGACCAGACTGCAATATTTCAGACCACTCCAAAACCTGTAAACACAGGGACGCCAGGAAGGGCAGTTGCTGAGGAAGAAGAACCAGGTGAAAAAATTGGAGGAGGGAAAGGTGTTTTCGATGATGGGAAAGTGCAAGAACCGAAAGAGAAAGAAGCAGAAGTTGCAAAGAGTTTAGAGGAGGATTCTGAGGAAACAGATGACAGTGAGGTTTCTGAGAATGAGGATGATgacgaagaggaagaggaggatgaggaactGGACCCAGAAGCAGAGCCTGGAGGTTCAGGCGAACACCGCTGTAGCGTCTGTGACCTCGTCCTTTCCTCCAGCTTCCAGCTCCAGGAACACATGAACCTGCACACAGGGGCACGCCCCTACTGCTGTGCCGAGTGTGGTAAGCGCTTCTGTCAGCTGGCCAACTACCGCTCCCACCTGCGGACGCACGCCCTGCCCCAGACCTCAGTCCCACCCGTACAGCTCCGCTGCCGTGTTTGCCTGAAGGGCTTCGATTCTGAGCAGGGTTTGAAGGACCACCTATCCAAGTCCCACTTTGAGAAGGAGTTCTATGAGTGTGACGCATGCAAGCGCATCTTCACCTGCCTGACCAAGTGTGAGGAGCACCTGGAGGAGCACAAGCGCGAGCTGGCGGACCACGTGTGTCTGCAGTGCTGCCGCCGCTTCCGCCTGCGCCGCTCTCTCCGCCGCCACAAGGAGCGGGGCTGTGTCCGCAGCTATCGCTGCACCGACTGCCCCATGAACTTCAGCCGCAAGAATGCCCTCCTCAAGCACAGCTTCTCCCACCTGGGCCTGCTGCCTTACACCTGCATCCAGTGCCGTGCACATTTCCGCCTGGCCAGGCTCTACCGTAAGCACGAGTGTGAGCCGGAGCGGCTCCACTGTGTGGCATGCCTGGGCGTCTTTCAGAGCCACAACGACTTCCAGAGGCACAAGAGGGAGACGGGCTGCTGGGGCCAGCAGGGGACCAAGGGGGATGAGATCCGCTGTATGGAGTGTGGCCAGGCCTTCTCCACGGCTGACGAGCTGAAGAATCACGCCGGGGCCCACCAGAGGGTGATGACCTGCTCCGAGTGCGGCAAGGGCTTCCGCTCGGCCTTGATGCTGATGTCACACATGGGGGGCCACGCAGGGTCGAGGCCCTGTCTGTGTAAGAACTGTGGCCTGGGCTTCCCTCACCAGCAGGGTTACGAGAGCCACCTCAAGGACTGTGGACGCAAACCCCCTCCTGTGATGGCTCCAAAGAAACTACGGAAGGACCCCCCTGCTGCTCCTTCCAAACCCCTACCCCAGCTCGCTCCAAGGCATCTCCCTGCTCCTGTGAAGAAACCAGAGAGTCAAGTGTCAGCACCACTTCCTACTCTGATGAGAATGCCAGGCTCTGCCCCTGCCAGAGTCACTATGGGAGTCCATAACACCACTACTGTCCGTGTGGTGAGCCCTGACCAACCCACCAAGGGGCTGTGGAAGCTCAGCCTGGACAAACAGCCGCCTCCTGGGGTGTCCTTGGTCATGTTTGTCCCTGCCAACACCCCTCTGGCCTCTGGCCTCTCTGGCCCATCCTCCACCGCCCAGCTTCCAGCCCTCTCAGGCACCCAGTCCCAGTGGAAGGTCCTCAACCCAGCACCAAATCCAGGAGCCCCTCCTCCGGTGCTGTGCCAGTCCAGCTTCACCTCTGAGCCGGGCCTGAGCCTCATAGCAGAGGCAAACCGGCGCTACTCCTCTGATGCCCCGCTGGATCTGGCATTAAAGACAGCTGACTACGAACAGGAGCCTGCTAATTTACTACCTCTTGATCTGTCTAACAAGTCGACTTGCTCCACTCCTTCTGCTAACCTTGTAGTCAAGACTGAACCGAGAGACCCTGGGTTTGCAGAGGAGACTGAGGAAGAAGTATTCACAAGTTTAACAGGTGATAAAAAGGGGATAGTCTTTCAGAGTAAGAAGGAGCCAGGGGAGGATTCTAAAATGGAGGCTATGGCTCAGAAGGGGGAAaatggagaagggagaggagatgaaGACAGGCAAAATGACAGCAGAGATGATGGAACAGCTCAGTCTCAAATTAAGAAGGCATCAAAGCCGGGAGTCCCGTCAACACTACAGCTCCTGACCGTCAAACAGAAGAACACTGCCAAAGTGGATCCAGTGAATCAGCTGAAAATCGAGTCAGTCAGCTCTTTGCACTCCAAAATGCTTCGGGGCTTAGTCCATATAAAGCAGGAACCACTGTCTCTAGAGCCTGACAGTGGAACACAGAGCACAGACTTCTGTTGGTCCAGCCCGCTGACAGCATTGAAGAGGAAGATGGAGCCAGACGTGGGGCTGGACTTGAGATGGGATGGGGGCACCCCAGGCTGTGTGCTTGACTTAAGGTTGAATGGAGGGAACCCAGCCAGTTGTGATGTGGCGgtgaaagcagaggagaggaacatGGAAGGAGACCGTGTAGAGGAAGCGCTTGATGGTGGCGAGAAGGATGGagcaacagaggagaggaaagcagaTAAGGGTGGAtcggaggagaggaaagagcagAAGGATGGATCGGAGCAGGATGGAtcggaggagaggaaagaggaggatggaacggaggagaggaaagaggaggatggaacggaggagaggaaagagaaggctggattggaggagaggaaagagaaggctggattggaggagaggaaagagaaggatggaacggaggagaggaaagagaaggatggaacggaggagaggaaagagaaggctggattggaggagaaggatggaacggaggagaggaaagagaaggctggattggaggagaaggatggaacggaggagaggaaagagaaggatgGAACAGAGGAGATGGATGGAACGGAGGAGTCTGACACACCTGTTGATGAACCCACAGCCCATAACCCAGAGACAcagctcccctcctctcccatcccatctcctccctcctcaccaccatgTAAAAGACGAAGGTCACTAAGGACAAGGGAAAAGCCTAGAGCCCTACACGACTGTTTATTATAAGGGCAGTACTTTACAGAGTAAAAAATAAGATTGCTGACAACAATGTTAATTAGGCTGCTTTTTAATGGCCCGAGGAACAGAGGACAACAACCAAGCCTAATGTAAAACAATTCATACTAGGCCTGTTATTAAATCATAATAGCAACACATTTTGTGAATTAGTGGTGATTTTGATAAACCATGCCTCTACATTAATTTGCCCTCGGGATTTGGTTGCCTTCCTGTATTCCAGTGATTTTTTTTGTTAGACATTGCAAGTCTTCAATAGCTATGTTTAATGTACCTGCTAGTGCTTACTGAGCTAGCCAACAATCCTGGTTGTTAGCTGCTTACTGTGTGGCAAGCGATTGAGATTAGGGTAAATAGTGGCTATTGTTTTCTATATTACAGTAGTTGCGTATGCTGGCAATAGGATCATGCTCTTCTTCCAGTGTTACCGCACACATTTCCAAACACTCCATATCTATTTGACTATACCAACATAacttatttgttatttttttgttataGGTTGTCTAGTTAGTCTTCAATTGAATGTCATTGTAATTTTGTAGTTTCTATTCAATATAAGCTGCTGTATGGGACTTCAGTCGCCAAGGTTTCTTATTCAGGTACTGATGGAGAATGTTTGGGAGCCAGGATTTAATGTACTGTCAACTTTCTGAGAAATGTTTCTCAACAGCTCGGTTTTTGTTTGATTTGAGTTCCATAATGGGTAAAATATGCAAGAAATATGTGCTGTCCAATTGTAATGTTAAATTTACTTGTATATCTTTTTCTATCACGTTGAATGTCTTACCCCAACTTCAACTGAATGGTTACAGTGTTTTGTAGAGTTTTAAAACATTCTGTTCAGAAATTGGGATCTTAAAGGATACAAATAAAGATCAACGTGTCGGAATGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142367 lncRNA downstream 2733 22776731 ~ 22777311 (-) True si:ch211-79k12.2
TU142369 lncRNA downstream 3605 22775107 ~ 22776439 (-) False si:ch211-79k12.2
TU142377 lncRNA downstream 12271 22766253 ~ 22767773 (-) True G123247
TU142276 lncRNA downstream 119331 22636042 ~ 22660713 (-) True G123158
TU142274 lncRNA downstream 143419 22636042 ~ 22636625 (-) False G123158
TU142398 lncRNA upstream 25470 22817263 ~ 22817587 (-) True G123267
TU142399 lncRNA upstream 26273 22818066 ~ 22818280 (-) True G123268
TU142371 lncRNA upstream 28807 22820600 ~ 22821816 (-) True G123241
TU142368 lncRNA upstream 30904 22822697 ~ 22823019 (-) True LOC110538050
TU142363 lncRNA upstream 46978 22838771 ~ 22839536 (-) True G123234
XM_021624514.2 mRNA downstream 334 22774508 ~ 22779710 (-) False si:ch211-79k12.2
XM_036942515.1 mRNA downstream 5729 22755352 ~ 22774315 (-) False LOC110534479
XM_036942519.1 mRNA downstream 5729 22755352 ~ 22774315 (-) True LOC110534479
XM_036942466.1 mRNA downstream 30906 22550928 ~ 22749138 (-) False cadm4
XM_021624549.2 mRNA upstream 2393 22794186 ~ 22803083 (-) False LOC110538019
XM_021624558.2 mRNA upstream 2393 22794186 ~ 22803145 (-) False LOC110538019
XM_021624567.2 mRNA upstream 2393 22794186 ~ 22803401 (-) True LOC110538019
XM_021624536.2 mRNA upstream 11654 22803447 ~ 22812952 (-) False LOC110538006
XM_021624527.2 mRNA upstream 11654 22803447 ~ 22812953 (-) False LOC110538006
TU142062 other downstream 401884 22376153 ~ 22378160 (-) True G122972
TU142002 other downstream 622510 22120580 ~ 22157534 (-) False LOC110537842
TU142449 other upstream 213193 23004986 ~ 23005812 (-) True G123308
TU142589 other upstream 393847 23185640 ~ 23199252 (-) True G123435
TU142857 other upstream 488386 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 1112046 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 1367374 24159167 ~ 24161443 (-) True LOC110538705

Expression Profile