RNA id: XM_021624567.2


Basic Information

Item Value
RNA id XM_021624567.2
length 2624
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110538019
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 22794186 ~ 22803401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACATTTTTCACCGGAGTTATTCATCAAATCTTTAGCTACAAACAGCGAATTAATTAGATTATTTACCAAATCAACTGCACGCAAGCATAGACAAACACGTGTCTATGCATTTACTCAAATTAAGGATAAAAGAGCAGAGAAGCATTCAAAATGGaattgttttgttgaagaccAAAATATTGCCCTTGTCACGTGACAAGGGGCAATTCAATTTCCACATTCACTGTACTGGAAGCGGTTTGAGGACATCCAGTCTCCCACGATGGACTCAGACATACTGAATATAGAGGAGATAGTGATGGGGAAGGGGCCACCAGATCCCCCTGCAGAACTGACCACTGAGAAACCAGCAGAACCCTACAAACCCATCTCCTTCAAAGCACCGCCTCCACCCACCATTCAACCATATCAGCATGAGAACCTGCAGTGTTTCCAGTGCTTCATCACCTTCTGTAACTCCAAAGCCAAGGAGAGGCACATGAAGAAGAGCCATCGTGAGGAGTACAAGcagcagctccagcagGGAGATACTCTGTTCACCTGCTATGTGTGTGACCGTACCTTTCCGTCCTCGGAGGAGCTGACCCAGCACCAGGGCTCACACAACAAGGAGGACAAGCCCTTCAAGTGTCCCCACTGCCAGGAGAGCTTCCGCACCTTCTCTGAGcTGACGACCCACAGGAGACAAGTTTGTCCAGAGAGGCAATTTGTGTGTAAGGACTGCAGTGAGACCTTCCGCAGCCCCGCCCTCCTTCGTACCCACCGCTTGGCCCAGCACCCCCGTCCAGAGGCAGAGGTGGATGAGCCAGATGACCCTACCAAGACCCACCGCTGTGGGAAGTGCAACCGGGGCTTCGAGACTGAGTCTGAGCTAATAATGCACCAGGAGAACCACGCCGGTGACCAGCACTGCAATGGCAGTGCTTCGCCTGCAAAGAAGCGCGGACGGCCCTTTAAAGCAGAGGACGCAACGGTCGGAGAGaagaaagggaagaggagaaagaaggaagagGGCACAGAGGAGGCGGAGACTGGAAACAATGCAGAGGAGGCTGCAGCAGCTCCGGCTGAGACCAAGgggaaagcagcagcagcaggaggtggCAGGCGAGGCCGTCCTAAAGCAGCAGCAGGCGAGGAGGCCAGAGAAGACGACAGTGAAGCCCCAGCAGAGGAGAAGAAACCCAAAGCGGCTCCCGCTCCACCCAAGCAACACCCCTGCCCTGAGTGTGAGCTCACGTTCCCTGCCCTGGCCCAGCTCCGCGCCCACAAGAAGGAAAAGCACACCCCACGTAAGGCCCATCCCTGCGAGGAGTGTGAGGAGAGCTTTGCCCGTCCCGAGCAGCTAGAAGCCCACAAGAACCGGGCACACACCAAGGGGCGTTACGCCTGCCCTACCTGTGGAAAGAGCTTTGGCCGAGAGAGCAACCTGAAGGGCCACCAGCAGAGCAGCCacccagaggaggaagaggaggagaagaagcaaGAGGCGGCGGGCCGCCGCAAGAGATAATTCAGAATGGGGAAGGGGGTTTTCTGTAAAGTGATTGGGAAGGGGGACGAAGTATCAGAGGGGTTTTAAAGAATTTGAATTTGGTCAGGGGTTTTTGTTTGAGGTTGGGCGTAAAATTTAGATCATAAGTTTGAGGTGTTTTTAGAATTTGAGGAATTTCTTGCAGGATTTTTAACAGGTGACCTGAGGTGTCCCACTGACTGTTCCGCATTTGTCATTTTTGGATTGTGTTAAGATGTTCAAGGCACACATCACACTTGGAGTGACTGACTTACTAACCAAAAGATGTTAGTCTTTGTTAAACCCATCTGTTTCTTTTCTGGACTAAGAACGACAGTAATTAGTTTTGGGGATTGTGTTTGTTCCCTCTGTTTTGATTATCTTTAAATGATGATCATGAGAATTGAGTTactgtttttacattatttttagAGGTGTATGTAAAATGGCTTTCATGCTGTCTGACATGGAGCTTTTCTTGTTTTATGATTTTTATATTGCTAATTACGTTTTCTGTAGTAGAAGATGAAATGCAACCACCGTGCATTTTATAAAACCTGTTGGCTATTTACTTTTTGAAAAATATTATTGTGATAAGTGAACCATGGATTGTAATGTTTGGGAGTTACATAAACGTCTCTTAGAAATTGCATCTATTTATATACGGTTTCTGGTTCATGTAGTGGTGCATTGTAATGCCAAACTTTCAATTATGATTAACTTCTAAATTGTACTGCTATTGTTAAATGCGCAGGGCATAAAAATTTTTAGGCCCAATGGTTCTTCTTTGATGTCATGCATGGATTTTAAAATAATGTCATCCTAAACAATGGTTGTAAAGAAGACTAATAGTCAATAACTCGAATTAGGATAATCCTGCTACCAGCTACACCTTGTCACCTATATTTCTGATTTGTTATACTTAATTTAAATGTCATAAATATTCTAATGAACTTTACATAAATTATTTGGTGTAAGTTTGGCATGATGACGAAATTACCAGAGGCCTGAATGGACGTTTTCTTGTTTTCATTGTTCTCCCCATGTAACATGCCTGGACACTCTGCCAATATGTAATAAAGGTGCCCCGAGGGCTGCTACAGAATGATA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142367 lncRNA downstream 16875 22776731 ~ 22777311 (-) True si:ch211-79k12.2
TU142369 lncRNA downstream 17747 22775107 ~ 22776439 (-) False si:ch211-79k12.2
TU142377 lncRNA downstream 26413 22766253 ~ 22767773 (-) True G123247
TU142276 lncRNA downstream 133473 22636042 ~ 22660713 (-) True G123158
TU142274 lncRNA downstream 157561 22636042 ~ 22636625 (-) False G123158
TU142398 lncRNA upstream 13862 22817263 ~ 22817587 (-) True G123267
TU142399 lncRNA upstream 14665 22818066 ~ 22818280 (-) True G123268
TU142371 lncRNA upstream 17199 22820600 ~ 22821816 (-) True G123241
TU142368 lncRNA upstream 19296 22822697 ~ 22823019 (-) True LOC110538050
TU142363 lncRNA upstream 35370 22838771 ~ 22839536 (-) True G123234
XM_036942474.1 mRNA downstream 2350 22780044 ~ 22791836 (-) True LOC118938460
XM_036942482.1 mRNA downstream 2393 22780044 ~ 22791793 (-) False LOC118938460
XM_036942491.1 mRNA downstream 2404 22780044 ~ 22791782 (-) False LOC118938460
XM_021624514.2 mRNA downstream 14476 22774508 ~ 22779710 (-) False si:ch211-79k12.2
XM_036942519.1 mRNA downstream 19871 22755352 ~ 22774315 (-) True LOC110534479
XM_021624536.2 mRNA upstream 46 22803447 ~ 22812952 (-) False LOC110538006
XM_021624527.2 mRNA upstream 46 22803447 ~ 22812953 (-) False LOC110538006
XM_036942529.1 mRNA upstream 46 22803447 ~ 22813135 (-) True LOC110538006
XM_021624630.2 mRNA upstream 19536 22822937 ~ 22838508 (-) False LOC110538050
XM_021624620.2 mRNA upstream 19844 22823245 ~ 22838507 (-) False LOC110538050
TU142062 other downstream 416026 22376153 ~ 22378160 (-) True G122972
TU142002 other downstream 636652 22120580 ~ 22157534 (-) False LOC110537842
TU142449 other upstream 201585 23004986 ~ 23005812 (-) True G123308
TU142589 other upstream 382239 23185640 ~ 23199252 (-) True G123435
TU142857 other upstream 476778 23280179 ~ 23281798 (-) True LOC110538355
TU144219 other upstream 1100438 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 1355766 24159167 ~ 24161443 (-) True LOC110538705

Expression Profile