RNA id: XM_036942704.1


Basic Information

Item Value
RNA id XM_036942704.1
length 5749
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC110538151
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 23456740 ~ 23520468 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCACATAATAGTCTGGACTGCGATTGGAGAGAGCAAGTGCGCACGGACGCAGACGCAGGAGATATCGGAGGCAGGCACCGAACAGAACAGAGCTCATCATAGTATCTGATTTAACTGTATTTGGGAATCAATTCAGATTATAAAGAAAAAACGTTCCAATTGAGAAACGGAAGAAGAAGGAGTGAAAATGGGACATACAGTGTTACCCATTTTGATGGCCGTATTGTCCCATTGCATGTGGGGAAATGTCGAGgcCTTGGCCGTGGCTGAGGTGAATGGACCGGGGCCCCTGGTGGCCGAGCCGCAGATTGCCATGTTCTGTGGGCGTCAGCTGCTGCACATGAACCCTGAGACTGGCCAATGGGAGCCTGACCCTCAGGGCCGCCAGGGCTGCTTTACAGAGCCCAACCAGATCCTGTCCTACTGCCAAGAGATGTACCCAGCCCTACAGATCTCCCATGTGGAGGAGTCCTCCAGCCCCGTCACCATCCCAGCCTGGTGTAAGAAGGGCTGGGGCCACTGCCAGACACGCCCCTTCATCGTCATGCCCTACCGCTGCCAGGtGGGTGAGTATGTGAGTGAAgccctgttggttccagaccgaTGCCGTTTCCTGCACCAGGAGCAGATGGATGTCTGTGAGAGCTACGTCTACTGGCACAACATAGCCAAGGAGgcCTGCACAGCAGACAGTCTGGAGCTGCATAGTTATGGGATGCTGTTGCCGTGCAGCGACCGTTTCCGTGGGGTGGAGTATGTGTGCTGCCCGGGGAGGGGCGGGTCCAGTGGCAGGGGGGAGACCGAGGGAGGGGACATTCTCCCAGCAGGACCCCAGGCCCTTAACCCTCAGGCCAAAGTCAACACAGGAGTCAAAGTGACAACACCCACCACAAGCCCCTCTCCTGACACCGATGTGGACGCGGCAGacatggaggaggaagatgatgagATGGTGGAAGAGGATGagcaggtggtggaggaggaggaagaggaggaggaggcagtagaagatgaggaggaggaggaggaggaggaagaggaggaggaggagcagcagcaggaggttgcagaagcagcagcagtgAAAGAGGAGTATGAGTACTCCATTGACTCTGGCCCCTACCAGGCTACTGACTACACAGACTCCTTCTACTATGAGAAAGGCCAGGGTCAGGCTGGTCGCAACCCCTCCACATCCCCACCCCAGACTAGGGGAGACAGCCtACCCACCCCTCACCCCACAGATGGCGTGGATGTTTACTTCGAGATGCCAGGGGACGACAGCGAACACGCCAACTTCCTGCGTGCCAAGATGGACCTGGAGGAGCGTCGAATGAAACGCATCAATGAGATCATGAAGGAATGGGCTGAGGCTGACAACCAGTCCAAGAACCTGCCCAAGTCTGACCGCCAGGCCCTTAATGAGCATTTCCAGTctgtgttgcagactctggaggAGCAGGTggcaggggagagacagaggctgGTGGAGACCCATCTGGCCCGCGTGGTGGCCACCCTCAACAACAACCGCAGACTGGCCTTGGAGAGCTACCTGACCGCCGTGCAGGCAGAGCCCCCTCAGCCGGAGCGGGTGCTGCAGGCTCTGAAGCGATACATGGCAGCAGAGCAGAAGGACCGCAGACACACTCTGAGACACTACCAGCACATTGAGGCCGTCGACCCCCAGAAGGCTGAGCAGATGAAGTTCCAGGTCTACACCCACCTCCATGTGATTGAGGAGAGGATGAACCAGAGCTTGGCATTACTCTACAAGGTCCCTGCCTTGGCTGAGGAGCTGCACGATGATATCCAGGAGCTGGTGAAGGCGGAGCGAGGAGATATCAGTGAGCTCATGACCACTTCCTTCTCTGAGACACGCACCACCGAGGAGCTGCTTCCTGccgagagtgaggaggagaaggatgacgaggaggaggaggagagagcctTCCAGAACAGGCCCTACCCACCTCGCATCGACCCACAGCCCAACACTAAGAAAGCCTCTACAGATGAGTATGACTATGCCACATCTGAGAGAAGCCCCACATATGAATATGAGGAGAAAATTAACACCTCTCTAGAGCTCAAGCAGGTGGTCTTCAAGTCTCCTGAGATCCAGACCGATGAACTGCAACCAGACGCCCTGGAGACGTTCAACCGTGGGGCCATGGTGGGGTTGCTGGTGGTTGCCGTGGCCATCGCCATGGTGATGGTGATCAGTCTGTTGCTGGTGCGCAGGAAGCCGTATGGCACCATCAGCCACGGCATCGTGGAGGTTGACCCCATGCTGACCCCAGAGGAGCGCCAACTAAACAAGATGCAGAACCACGGCTACGAAAACCCCACCTACAAATTCTTTGAGCAAATGAACTGAGGCGATGGGTGTGGCCTCCCGGTCATGCCCAATCACACGAGGCGCTCCCTTTCCTTGTTCCCCTCCTAGAGGTGGTCCCAGTCACACCGCCTATGATGTATTAAGATGTATCATTACGACCAACACTTTAATGTAACTTGACAAGCAAATAGGGGGTATACGCCCCAATCCTCTGACCAACCATGTCCCCACATCAGTTTTGGAATGTAAACCAGTAACAGAGATGTATTACCAGCTGATCCATCCTCTTACTCTTCTGGTCTAGAATAAAGGGGTGGACATTAATGCCACAGTgtaacaatcatctcctttggaGAGATTCACTCCTGTCTGCTTGGATAGGAATACCATTGGAATGGCTAGAGTTGACCCCCTTATTCTTAATAAAATTGATTGATATTTGTCAGAAACTGACTCAATGTTGAACAGTGCATTTTGCTTTGTTGTGTATGTCATCTGTTTATTCTTTGTTGGATTGTGTTACAGCTCTGATTCATTATATTCCAGTTCAGATAAATGGTGTAAAATGTGAACAAACAATATAGTCTGATTATAGTATAACGGATTTAAATCTCCATATAAACTGGCTACAATGACTCTGACATGATGACCACCAAGCCAACCCCAACTCCATGAGTCAATGTAGGACATCTTCTTTCAAAGCCAGGCACAGTTGTAAAGGTTAAGCAGAGATGAGGAGGTTGGGAATGTGAGGTATTGAAGCTTGATTAACTTAGTTGTTACTTAGTTATTACTTACCCACATATATTTTCAATCCATAGTAATATGGGTTGGTGATCTTTTGATATTAAGCCCAATCTCATCTCCTTCAGTCTGTGGCATCTGACACAACTGGCACCCAGAGCCTGTTCTATGCGATGTGAACTATATAATTGAACTAATGTACCAAATGTTCCATTAAGTGAATGACTGCTACCTAAAAAATTGTAACAAAGTAATGAGAAGTCCATTGTTTTAATGAAAGCATGCAGATTTGGTGTATGATGCTACCGTCTTTGTGTTGTTCCTGTTCTTTGCTTTTGATAAGATGGAAATGTGACAGATTAAAATGGACAGTGTAAATATCTttagaaaaaaaaacatcttcaAAATAGACATTTCTAGAATGATTTTGCATCAGTGTAAtggaataaaaaaataataatacttgtGCTGTTCAGAGAGAGAACATTTTCCTAACATGGCTGATTGAAAACGGACTGTTGTAAAAAACCAGCACAAGACGATACAGTTAACTTCTGACTGAATGTATTTTAGGTAGATGTTGAGACTTCATTTCTTCTTCGGGAGGGCATCACTCCCCTAGTAGAACCCCAAGGACTAACCGGTAATCAGTAGACAAGCTACATATCCAATACCTTCCTCATTATCTCACTGTAGTTTAACACTGGATGTCTCTTTTCACTATTTGCAGGTCTGAATGAGAACAGTGGGATGTCATTCATTATTGTGGTGCAATGGACTTCAGCATTAGGGAACATAGTGATGTTGGCAACATGGTGATATTGTGGAACAGTTGCACCTAAGGAGGTATGCCGAGGACTGGATTATTGCTCAGATTGGGTGGGACCACAATATTTGCTCGAGCACACCTGAGCTATTTTCAGTTTGTTTCAAATTCAAGTTGAATCTTTATTAGGGACATAGCCGGTTTCAGGCAGGATGAACATACAATACAGAACATATAGATGCTGTATAAACACCAGTTGAATGTTAGTCTACTAGGGAGATGTGTTGTGTCTCACTGAAGTCTCTGTCACTGTTATTATGAtcaatatcattcactgtatacagATAAGAAGGGATTGTCCACTTTTGAATGGCTGATTGTTGCCTCTTGGATGGGTTTTATGTTGAATTTATTTTCCACTACATGATTTTGGCCCCAGAGAGAGTTCTCTGTGTTGGATGGTCACATACACAGTAGGAGGTTTCTTCGTAATCTACAGTGTCAACTCCAACTACTGTTGGCCTACTGTACTACAGAGGATCCTAACCAAAACCAATCATCCTTCACTACTCTCAGAATTCTGAAAATAGCACTTTGTAAAACACCACCAGTCCTGAAACATCCTTAGATGTTTGTTGTTTATTTATAACTCATGGCTAGGTTGTTCTGCTGTGTACTCCATGAAACCACTTGTGACACGAGGGAGTAAATTATTGATCACATCAGAGGAGAGATGTGGCTGACTCACCCTCATCACCTCAAACCGTTCTGTTTCTTTATTCAAACACTGCTTTGAATATGGGAAGAGGAGTTCAAATACTTGAACTAAATTTGAATTTTCCATGTATTGCTTTTGGATTGTAGTAATCACAGGTTGTGGTTACTGCATCAAGATAAGTAGAGATCTGAGATAGTCTTTGTATAATTTGTACAGGTCCGTTTAGTGAATGAAAACATGGTACGTTCACAGTTTAAGTCAGTTGAACCTTGTATCGATACTACTGAAACCATAGAAGAGAATAAGCTTGCCTGTGTTTCCCCAAAGATTCAAGGTTTTCCTACCAGCATTTAGCAGATGTAGAATGGTGTATACTGTAGTGACTGAACACACATTTGTATGTCCTCTCTTGATTAAGATACTTCTGTTGgccttcctcccctccccaccagagAAAATATAAACAATTATATGgagagtttaattgctgcattATTGCCTTTTACAATGCTGTGTTTTGGATGTAattctgtattttttatttgagtaATTATCAATTGGATTGAGGGTCATGTTTTCTCACTGTATGAAAAATGTAGTAGCTTGTTTAAGGCACCGTTTAGAGGTTACATGTCTAACCTGCAGTTCAGATACAGTAGACCTACACTGTCTAAGTGcattgttgggccagtaaccgaaaggttgctggatcgaatccccgagctgacaaggttaaaatccgtcgttctgcccctgaaaaatgcagttaacccactgttccctggtaggccatcattgtaaataagaatttgtccttaactgacttgcctagttaaataaatgttcaatTTAAATATAAAAAAGTCTAACTAAATTGTCCATGGTGTGGCGCCAAGCACAACTGAACAAAATATTGCTCTGTCAGACAGATACTGACTGTATATAATGTGAACTCCCACCGTTTTGACTATACTCTGATTGGAATGAGGGAGCTGATCTTCAAATCCATTCAGAACTTGACCAAAGACATACTCTGCTCTAGAAGAGGTCAGACAACTGACTAATTTGGCCAATTGTCCTGAGCTATGTAGAATGTAATTCATGTGCAAGAAATCTGAGCAATGGAGATCTGATTAAGCTAATTAAAACTGTAATAAAATTACAAATGACCCACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142870 lncRNA downstream 90817 23264303 ~ 23365923 (-) False G123662
TU142871 lncRNA downstream 90817 23264303 ~ 23365923 (-) True G123662
TU142863 lncRNA downstream 201486 23252782 ~ 23255254 (-) True G123656
TU142867 lncRNA downstream 204074 23252405 ~ 23252666 (-) True G123660
TU142850 lncRNA downstream 219851 23236354 ~ 23236889 (-) True G123647
TU143045 lncRNA upstream 33731 23554199 ~ 23554769 (-) True G123821
TU143046 lncRNA upstream 34524 23554992 ~ 23555203 (-) True G123822
TU143089 lncRNA upstream 104234 23624702 ~ 23624901 (-) True G123859
TU143093 lncRNA upstream 106276 23626744 ~ 23627011 (-) True G123863
TU143112 lncRNA upstream 130834 23651302 ~ 23651533 (-) True G123882
XR_002475740.2 mRNA downstream 11532 23420299 ~ 23445208 (-) False LOC110538371
XR_002475741.2 mRNA downstream 11532 23420299 ~ 23445208 (-) True LOC110538371
XM_036942736.1 mRNA downstream 51314 23393669 ~ 23405426 (-) True LOC110538238
XM_036942732.1 mRNA downstream 51606 23393669 ~ 23405134 (-) False LOC110538238
XM_021625005.2 mRNA downstream 76972 23374879 ~ 23379768 (-) True igflr1
XM_021625218.2 mRNA upstream 38954 23559422 ~ 23607868 (-) False LOC110538403
XM_021625241.2 mRNA upstream 38954 23559422 ~ 23607868 (-) False LOC110538403
XM_021625249.2 mRNA upstream 38954 23559422 ~ 23607868 (-) False LOC110538403
XM_021625267.2 mRNA upstream 38954 23559422 ~ 23607868 (-) False LOC110538403
XM_021625225.2 mRNA upstream 38954 23559422 ~ 23607870 (-) False LOC110538403
TU142857 other downstream 174942 23280179 ~ 23281798 (-) True LOC110538355
TU142589 other downstream 257488 23185640 ~ 23199252 (-) True G123435
TU142449 other downstream 450928 23004986 ~ 23005812 (-) True G123308
TU142062 other downstream 1078580 22376153 ~ 22378160 (-) True G122972
TU141994 other downstream 1301011 22149517 ~ 22155729 (-) True LOC110537842
TU144219 other upstream 383371 23903839 ~ 23904677 (-) True G124840
TU144265 other upstream 638699 24159167 ~ 24161443 (-) True LOC110538705
TU144410 other upstream 748758 24269226 ~ 24270136 (-) True G125003
TU144456 other upstream 804112 24324580 ~ 24324836 (-) True G125043
TU144590 other upstream 1011194 24531662 ~ 24534529 (-) True LOC110538887

Expression Profile