RNA id: TU144456


Basic Information

Item Value
RNA id TU144456
length 257
RNA type TUCP
GC content 0.41
exon number 1
gene id G125043
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24324580 ~ 24324836 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGgccatctgggagagaggagaggaagagctgGGTTCCTATGAGAGATTCATGGCTCTCTTCAGGGCAGTCTTCGACCATCCtccagagggcagagagggagggcttTTCCAACTCCAGCTGGGGTGCCCAGACTGCTGCGGAGTACGCCTTCACCCTTCGGATTGTGGCAGCCTCCAGCGGCTGGAATGAGCTGGCGCTCCGCACTCTATTCCTCAGTGGACAGCGCAAAGAGGTCCAGACCGAGTTGGAATGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144454 lncRNA downstream 1342 24322964 ~ 24323238 (-) True G125041
TU144442 lncRNA downstream 15747 24308378 ~ 24308833 (-) True G125032
TU144418 lncRNA downstream 46081 24278259 ~ 24278499 (-) True G125010
TU144402 lncRNA downstream 68539 24255740 ~ 24256041 (-) True G124995
TU144401 lncRNA downstream 69686 24254656 ~ 24254894 (-) True G124994
TU144459 lncRNA upstream 3147 24327983 ~ 24328191 (-) True G125046
TU144460 lncRNA upstream 3645 24328481 ~ 24328758 (-) True G125047
TU144461 lncRNA upstream 4259 24329095 ~ 24329350 (-) True G125048
TU144466 lncRNA upstream 7575 24332411 ~ 24332692 (-) True G125053
TU144469 lncRNA upstream 9695 24334531 ~ 24334826 (-) True G125056
XM_021625736.2 mRNA downstream 71479 24249862 ~ 24253101 (-) True LOC110538767
XM_021625679.2 mRNA downstream 140408 24178523 ~ 24184172 (-) False LOC110538717
XM_036943182.1 mRNA downstream 140408 24178523 ~ 24184172 (-) True LOC110538717
XM_036962226.1 mRNA downstream 151744 24144519 ~ 24172836 (-) False LOC110538705
XR_005035960.1 mRNA downstream 184912 24138846 ~ 24139668 (-) True LOC118938710
XM_036943239.1 mRNA upstream 155429 24480265 ~ 24492482 (-) False LOC110538859
XR_005035966.1 mRNA upstream 155429 24480265 ~ 24492482 (-) True LOC110538859
NM_001160485.1 mRNA upstream 178970 24503806 ~ 24504593 (-) True LOC100301652
XM_021625867.2 mRNA upstream 206588 24531424 ~ 24540898 (-) False LOC110538887
XR_005035978.1 mRNA upstream 206588 24531424 ~ 24540898 (-) False LOC110538887
TU144410 other downstream 54444 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 163137 24159167 ~ 24161443 (-) True LOC110538705
TU144219 other downstream 419903 23903839 ~ 23904677 (-) True G124840
TU142857 other downstream 1042782 23280179 ~ 23281798 (-) True LOC110538355
TU142589 other downstream 1125328 23185640 ~ 23199252 (-) True G123435
TU144590 other upstream 206826 24531662 ~ 24534529 (-) True LOC110538887
TU144748 other upstream 450384 24775220 ~ 24776627 (-) True G125305
TU146650 other upstream 2236778 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 2326540 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 2946424 27271260 ~ 27278124 (-) True LOC110485245

Expression Profile