RNA id: XM_036943239.1


Basic Information

Item Value
RNA id XM_036943239.1
length 2098
RNA type mRNA
GC content 0.52
exon number 13
gene id LOC110538859
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24480265 ~ 24492482 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTCTTGGGGGCGGGTGACAGATGACGATCGACTTCACTGTACAATACTTTGTGAAAGCCCGCTCTCCGCTCTCCCTGGTTGACAAACACATTTGTGTTGAAGAAGAACCATGCTTCGAGTTGTGTTATCCCGAACTTTTCCTCGGATCTCTGGCATTTCCAATTGTCAGTATTCGGCGGCCGCCATCCCGGTTCCAAGCGCACAGCCCGAAGTCCATTATAACAAGCTGTTCATCAATAACGAGTGGCAGGATGCCATCAGCAAGAGGTCCTTCCCCACCATCAACCCAGCCACAGGAGAGGTCATCTGTCAGGTGGCTGAGGCAGACAAGGCAGATGTGGACAAGGCTGTGAAGGCTGCCAGGGAGGCCTTCCGGTTTGGGTCACCATGGCGACGCATGGACGCGTCGGACCGCGGGCTGCTCCTGAGCCGGCTGGCAGACGCAATCGAGAGGGACACAGCCTACCTAGCGGAACTGGAGACCCTGGACAATGGGAAGCCCTATGCCGTATCCTACAGTGTGGACGTGCCCATGGTGGTCAAGTGCCTCAGGTACTGTGCGGGCTGGGCAGATAAGTGGGAGGGGAAGACCATTCCCATCGATGGAGACTTCTTCTGCTACACCCGTCATGAGCCCATCGGTGTGTGTGGCCAGATCATCCCGTGGAACTTCCCTCTGCTGATGCAGGCATGGAAGCTGGGGCCAGCTCTGGCTACAGGCAACACTGTGGTGATGAAGGTGGCTGAGCAGACCCCCCTCACTGCCCTGTATGTGGCCAGTCTCATCAAGGAGgttGGTTTCCCTCCAGGTGTGGTGAACATCCTGCCTGGTATGGGTCCATCTGCTGGTTCTGCCATCGCCTCCCACATGGATGTGGATAAGGTGGCTTTCACAGGATCTACTGAGGTAGGTCACCTGATCCAGCAGGCATCTGGCTCCAGCAACCTGAAGAAGGTCACTCTGGAGCTGGGAGGAAAGAGCCCCAACATAATCATGTCTGATGCCAACAtgGCGGAGGCGGTGGAACAGTCCCACTTTGCCCTGTTCTTTAACCAGGGCCAGTGCTGCTGTGCCGGCTCCCGTACATACGTGCAGGACACCATCTATGATGAGTTTATGGAGCGCAGTGTGGAGCGGGCCAAGAGCAGGGTGGTGGGAGACCCCTTCAACATGAAGACTGAGCAGGGACCGCAGGTGGATGAGGAACAGTTCAAGAAGATTCTGGGCTACATCAGCAGTGGGAAGCGTGAGGGGGCCAAGCTGATGTGCGGGGGAGGAGTGGCTGCAGACCGTGGCTACTTCATCCAACCAACCATCTTTGGAGATGTCCAGGACGGCATGACCATCGCCCGTGAGGAGATCTTTGGGCCGGTGATGCAGATCCTGAAGTTTAAGACTCTGGAGGAGGTGGTTGAGAGAGCCAACGACACAAAGTACGGCCTGGCAGCTGCTGTCTTCACCAAAGACATCGACAAGGCCCACTACATCTCTAGCGGAATTCGCGCTGGCACTGTCTGGATTAACTGCTATAATGTGTTTGGAGCACAAGCCCCCTTCGGTGGCTACAAATATTCTGGTAACGGTCGTGAGCTGGGAGAGTATGGCCTGGACAACTACACTGAAGTGAAAACGGTAACAATCAAGGTCCCTCAGAAAAACTCGTAAAGACGTCAGAACTCTGCCTCCAATCAAGGAAACTAACTGACCATAGGGAAGGCTCTATGGAACTAAATCAGCCTTTATTGTGTTTATCACAGAGTCCTCAGTTATTCAGTTGGACTTTAGTGTTACTTAGCCTCTGTACTCATCTCTAACTTCATGTAAAGAATTTCCAAACAAGATGAGAAAACAATTACAGGCATGGTGCTGTTAGTTTACACCCAGCTTGTTGTACAGCCTTGTCAAACTTCAACAGCTTATTTTAAGCACTTCATAGAGCATGCCATAATATTTCATAATACTTATTTCAGTCATTATGTTCATcctgttttaatatggtgaatCCCTGCTACAATGCAGAGTAGTTTTGTACTCTTGTAGAGTGAAAGTGTGAACTTTGAAAGGATTTTGGATAATAAATGCACTTGATACTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144552 lncRNA downstream 7910 24472013 ~ 24472355 (-) True G125126
TU144549 lncRNA downstream 10281 24469753 ~ 24469984 (-) True G125123
TU144498 lncRNA downstream 59361 24406087 ~ 24420904 (-) True G125083
TU144497 lncRNA downstream 67181 24394855 ~ 24413084 (-) False G125083
TU144516 lncRNA downstream 70461 24404413 ~ 24409804 (-) True G125101
TU144630 lncRNA upstream 77431 24569913 ~ 24570690 (-) True G125192
TU144658 lncRNA upstream 129921 24622403 ~ 24622633 (-) True G125220
TU144670 lncRNA upstream 141284 24633766 ~ 24685283 (-) True G125230
TU144684 lncRNA upstream 156081 24648563 ~ 24650144 (-) True G125244
TU144714 lncRNA upstream 214992 24707474 ~ 24707709 (-) True G125273
XM_021625736.2 mRNA downstream 227164 24249862 ~ 24253101 (-) True LOC110538767
XM_021625679.2 mRNA downstream 296093 24178523 ~ 24184172 (-) False LOC110538717
XM_036943182.1 mRNA downstream 296093 24178523 ~ 24184172 (-) True LOC110538717
XM_036962226.1 mRNA downstream 307429 24144519 ~ 24172836 (-) False LOC110538705
XR_005035960.1 mRNA downstream 340597 24138846 ~ 24139668 (-) True LOC118938710
NM_001160485.1 mRNA upstream 11324 24503806 ~ 24504593 (-) True LOC100301652
XM_021625867.2 mRNA upstream 38942 24531424 ~ 24540898 (-) False LOC110538887
XR_005035978.1 mRNA upstream 38942 24531424 ~ 24540898 (-) False LOC110538887
XM_036943353.1 mRNA upstream 91911 24584393 ~ 24595385 (-) False LOC110538978
XM_036943349.1 mRNA upstream 91911 24584393 ~ 24601385 (-) True LOC110538978
TU144456 other downstream 155429 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 210129 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 318822 24159167 ~ 24161443 (-) True LOC110538705
TU144219 other downstream 575588 23903839 ~ 23904677 (-) True G124840
TU142857 other downstream 1198467 23280179 ~ 23281798 (-) True LOC110538355
TU144590 other upstream 39180 24531662 ~ 24534529 (-) True LOC110538887
TU144748 other upstream 282738 24775220 ~ 24776627 (-) True G125305
TU146650 other upstream 2069132 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 2158894 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 2778778 27271260 ~ 27278124 (-) True LOC110485245

Expression Profile