RNA id: XM_036943349.1


Basic Information

Item Value
RNA id XM_036943349.1
length 1356
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC110538978
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24584393 ~ 24601385 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aATAATTTTTTACTTCGTTCATTGACTCATTGGCCTGGTCTGTTTGATCTGTTTCGCAAGCGCTCCCGGTAGTCTCGCGATGTTgcacctctgggtttagaaactctgtggcgAAACTCTTCTGTCTCCAGTCGCTACGCTGAGATGTTAACCTTTGCCAGACCGCTACCTCCATAACTTGATTGAGGGTTTCAGACTCCGGGGACGAGATGGCGTCCATCCCTATTGAATtATATCCAGGGGTATGACCTCGCAGGGGACAACCTCAAGAGGGGTGGGCAAAGGTGGTGATAGAGGAGAGGAGCCAGGATCCTTGCAGGGTGGGCAGCAACAGTCCATGCACGGCGCAGGCCACTGCAAGTGGTTCAATGTGCGGATGGGCTTCGGATTTATATCCATGACTAGTCGTGGGGGAACTCCCGTAGATCCTCCTATGGATGTATTTGTTCACCAAAGCAAGCTGCACATGGAGGGCTTTCGCAGCCTGCGGGAGGGAGAGCCACTAGAGTTTACTTTCCAGATGTCCCCCAGGGGCCTGGAGTCTGTACAAGTCACGGGCCTCGGGGGAGGCCCCTGCTTGggcagtgagaggagacagaaaCCCAAGCCCCCAGCCCCGCAGCAGAGATGGAAGCCAAAAGGAGACCGatGCTATAACTGTGGAGGACTAGACCACCATGCCAAAGAGTGTAGCCTGCCGCCCCAGCCAAAGAAGTGCCACTACTGCCAGAGCGCGACGCACATGGTGGCCCACTGTCCTCACCGCCCCCCCGGCCCCTTGTCTCCCGGCCCTGCCACAGCCACTCAGGGAAGACGCACTACTGTGGACCAGTACCCCTCTACCTTCACCACCACCTCCTACAGCCCCAGTCCCAGGCAGGGAAACAGGCACTCCCAGCCCTCTCAGGACAGTTCCTCCCCCCTCAGCAAGTCTTCCAGCTCTCCGGAAGACCCGGCACAGATTCAGAGGAGATCTGGAGGACACCACAGGTTGAAACAATCCTGAAGCACATCCACCTTGGACGGATGCCACCTGTTAGTATTACCTCTGGTCCAATAAAACCACCTTCCTTCAGTCTGATCAGTCTCCTCCTCACACAGACTCATCCTGAGCTACATCCTGAGCAACCTCAAGCAGATCCACATGTCTAACCAAATGGACAGTAAAGTATCTATTTTACTTCCCCAATCCCTCCCAGACTCTCCCTCTACTAAACTGTGTACATCTTAGCTACCTCCTGGGCCAACTCAAACCATCTCCACATAGATAGACCTATACTCTTAGCTACCTCCTGGGCCAACTCAAACCATCTCCACATAGATAGACCTATACTCTTAGCTACCTCCTGGGCCAAC

Function

GO: NA

KEGG:

id description
K18754 LIN28; protein lin-28

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144630 lncRNA downstream 13703 24569913 ~ 24570690 (-) True G125192
TU144552 lncRNA downstream 112038 24472013 ~ 24472355 (-) True G125126
TU144549 lncRNA downstream 114409 24469753 ~ 24469984 (-) True G125123
TU144498 lncRNA downstream 163489 24406087 ~ 24420904 (-) True G125083
TU144516 lncRNA downstream 174589 24404413 ~ 24409804 (-) True G125101
TU144658 lncRNA upstream 21018 24622403 ~ 24622633 (-) True G125220
TU144670 lncRNA upstream 32381 24633766 ~ 24685283 (-) True G125230
TU144684 lncRNA upstream 47178 24648563 ~ 24650144 (-) True G125244
TU144714 lncRNA upstream 106089 24707474 ~ 24707709 (-) True G125273
TU144772 lncRNA upstream 212259 24813644 ~ 24834540 (-) True G125325
XM_021625867.2 mRNA downstream 43495 24531424 ~ 24540898 (-) False LOC110538887
XR_005035978.1 mRNA downstream 43495 24531424 ~ 24540898 (-) False LOC110538887
NM_001160485.1 mRNA downstream 79800 24503806 ~ 24504593 (-) True LOC100301652
XM_036943239.1 mRNA downstream 91911 24480265 ~ 24492482 (-) False LOC110538859
XM_036943381.1 mRNA upstream 261521 24862906 ~ 25110554 (-) False LOC110538828
XM_036943390.1 mRNA upstream 270346 24871731 ~ 25110583 (-) True LOC110538828
LOC110533704 mRNA upstream 816055 25417440 ~ 25427699 (-) False LOC110533704
XM_036943476.1 mRNA upstream 827598 25428983 ~ 25441162 (-) False LOC110539072
XR_005035994.1 mRNA upstream 827598 25428983 ~ 25441162 (-) False LOC110539072
TU144590 other downstream 49864 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 259557 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 314257 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 422950 24159167 ~ 24161443 (-) True LOC110538705
TU144219 other downstream 679716 23903839 ~ 23904677 (-) True G124840
TU144748 other upstream 173835 24775220 ~ 24776627 (-) True G125305
TU146650 other upstream 1960229 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 2049991 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 2669875 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 3164772 27766157 ~ 27766532 (-) True G129250

Expression Profile