RNA id: XR_005035994.1


Basic Information

Item Value
RNA id XR_005035994.1
length 1488
RNA type mRNA
GC content 0.53
exon number 10
gene id LOC110539072
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25428983 ~ 25443516 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATAACATCACTAGCTAGTATCTCAAATGATTGTAATTTACCTGGCTTGAAAATACGTTTGTGGTGATGTTGTGGTTTCACTTGACACTTGCTAACTATTGCGAGCAAGTAGTTAGTAGAAGAAGAGGTGAATTAAGCTGATATATTGAGCAGCCCCCTCTGTTGGCCTAAACAAGCACAACGCGATTGAGACGTCAACCCGTAGGCTCTGATGCCCGGACTTTCTTGCCAATCTGTCTCAGATGACTCGGTGGATTTGGGTGGAAGTGCTAAGCGCTCCAGTGTTCTGGACAGCCTGGACAGAGCCTCTCAGAAACCACCACCAAAGAAGACATCAGCTGTCCCTGTgccgtggaggaggaggacagcgAAGAGACACCTGGCAGAGCAGAGGCTGCCAAACGCAGGTTCACTAAACCCAAAAAGCCCCAGCAGCAGGCTGTGGTGAAAACTCAGGAGGATGAGAGTGAGAGCAGCCCAATGAAAAGCACCCCTCAGGGTATAGGAATCACTACTGTAACCCCTAGTTCCTTAGGGCCACCCAATGGCACATTGTCTCCCCATCATTGGCGATTGCTGAGATCTGAGAAGATGTTCCGTAAGTCTCTGAGAAGATCCCAGCCTAtccaggagggggaagaggagctgCAGCATCAGGGAGTCGAGGGGGgttcagaggaggaggaggagggggcagagcCTGTCATCTTCAGCAGAGACAGTCTGGAGCCTGAGGGTGTCTGCTCTGACTCTGTGATGGCATCCGGACCAGGTCAGAACGCTGCAGTGGGTCTTAGTCTGGGCATGGACAgcctggaggaggaagaggagaaggccCGCTTCTTTGCCCACCTGGAGGGAGGTGTGTCCTCCACCATAGACTACTCCAGACTCAACATAGATCTGGATTCCACCAGCGCCTCCACCACAGCTACCACCCTCAGGAAGGCAGAGGCGGCTGTGGCTGGTGTCgatcagagagaggaggagaaagctATGGAGTCTGACAGACTCTCCCCAGCCTCCAACCACTACAGCGAGGATGAGCACTTTGAAGATGAGGTCATTGAGGAGCTGAGAAATTGGaaGCCTAAAAGGCCTGCCATGCTCACCAAAGTCCAGACTGTGGTGGTCTGAGTGTGAGCAGCGAGCTGGTGGCAGTGGTTCAGTCCTTCGCTGCCTTCCTCCAGCAGCAACATCAGATGAAGATGAGAGGTCACCAGGATACCAGTCACACTGTCTCCTGGGAAACCAAAGGTCAACAGGAAGCCAGCCAGACTCAGGAGACTGAGTGTCCATCAGAGAGGAAAATTTCCAGACCCACAAATGTCtccttgtataaacacacatctcatccccCTCTACTGGTTGGGTGCTCAGAACAAgactctgctgtgcaccaatggggcccgctctggctagagcaaggcccgcctccaaccctttgtgaccagtcagaagaccaaaACGACAAgtctccacctact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145153 lncRNA downstream 6517 25421991 ~ 25422466 (-) True LOC110533704
TU145149 lncRNA downstream 9533 25419147 ~ 25419450 (-) True G125672
TU145116 lncRNA downstream 72402 25356366 ~ 25356581 (-) True G125644
TU145115 lncRNA downstream 73707 25354957 ~ 25355276 (-) True G125643
TU145070 lncRNA downstream 137660 25289718 ~ 25291323 (-) True G125598
TU145170 lncRNA upstream 470 25441632 ~ 25441749 (-) True G125693
TU145195 lncRNA upstream 12902 25454064 ~ 25454339 (-) True G125717
TU145250 lncRNA upstream 58813 25499975 ~ 25500274 (-) True G125771
TU145251 lncRNA upstream 59615 25500777 ~ 25500996 (-) True G125772
TU145254 lncRNA upstream 61616 25502778 ~ 25503003 (-) True G125775
LOC110533704 mRNA downstream 1284 25417440 ~ 25427699 (-) False LOC110533704
XM_036943390.1 mRNA downstream 318400 24871731 ~ 25110583 (-) True LOC110538828
XM_036943381.1 mRNA downstream 318429 24862906 ~ 25110554 (-) False LOC110538828
XM_036943349.1 mRNA downstream 827598 24584393 ~ 24601385 (-) True LOC110538978
XM_036943353.1 mRNA downstream 833598 24584393 ~ 24595385 (-) False LOC110538978
XM_021626064.2 mRNA upstream 18392 25459554 ~ 25460882 (-) True si:ch211-198c19.1
XM_036943544.1 mRNA upstream 227864 25669026 ~ 25790258 (-) False LOC110539098
XM_036943516.1 mRNA upstream 227864 25669026 ~ 25790259 (-) False LOC110539098
XM_036943525.1 mRNA upstream 227864 25669026 ~ 25790259 (-) False LOC110539098
XM_036943534.1 mRNA upstream 227864 25669026 ~ 25790259 (-) False LOC110539098
TU144748 other downstream 652356 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 894454 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 1104147 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 1158847 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 1267540 24159167 ~ 24161443 (-) True LOC110538705
TU146650 other upstream 1120452 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 1210214 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 1830098 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 2324995 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 2655520 28096682 ~ 28149986 (-) True LOC110485663

Expression Profile