RNA id: XM_021626064.2



Basic Information


Item Value
RNA id XM_021626064.2
length 1041
RNA type mRNA
GC content 0.46
exon number 2
gene id si:ch211-198c19.1
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25459554 ~ 25460882 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acatgAGCCCTCCCTCAAACACTCATGACAGAACCCGGTCTTCCTCTGCTACAGCAAGGGTCAGGGGCAACACTGCGACCAACACAACCATATACCACAGTCTTTGAGCAGAGACCTGCAAGCTAAACCTACAGACTCATCCTATAGCGACATTGCGGGATAACCCTTAATTGGTGTTCAGCATGGCCAATCACACCAGCGTCCTGAGATGCATCCTGCTACTGCTATTGGCCGTCACTCTGGCCTCGGCTTTGAGAACATTGGACACGAATGAAGAGCTGGAGAAGACTGGCTTCGGGACCCCGCCCCCTCGCCACGGCCTCAAACTACTCCTCTGGTATGTCCAGACCTGCATCGACAACAACATGGTGTCTCTCTGTGACCCCAGGGAGGGAGCATACGGGTTCCATATGTTCAAGAACTATAAACTGTTACTCCCCAAACTGAAAGACCAGAACCTGTACACCTACTACACCATTGGTAACCTCCATTCCCACGGTGCAGAGAACCTGCCCTATGAAGTGAGGCGGTACTACGACAAGGACAACCTCCTCAGCAACCAGGACAGGGTGTTGGTGAAGTACAACCAGAACAACAATCACATCGACAAGATCTACATCTCAGAGCACTACAAGCAACGCAAGACCTACATGATCGGGCCcaatcttctctcctctctcagacagCCCAGCTGTCTTGCAATGATATGATGTATGAATATAAAATCTGTACATTATGCTTTTCACTGTTGTTTTTCTTGCCACAAACCTGATGGCATTACTAAACCTGTAATATGTCAACCTGACTTCATTGGTGATGTGTTCACTGTAACTTTCTGTTTCCTTTACAGACacgctatagaaatgcatttttaCAGACAGAACATTGCGATCCTGAGTGCACTGAAATCAAGTTAATTTATGTCTGCTATAATGCAGGTCAGTTTAGCACATTGACAAATGTCCTTGTTCAATCATTCCTATTGATGTTGATTCAACTGATGACTACAACATGACTATAAAATGTGAACGTAATGCAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU145195 lncRNA downstream 5215 25454064 ~ 25454339 (-) True G125717
TU145170 lncRNA downstream 17805 25441632 ~ 25441749 (-) True G125693
TU145153 lncRNA downstream 37088 25421991 ~ 25422466 (-) True LOC110533704
TU145149 lncRNA downstream 40104 25419147 ~ 25419450 (-) True G125672
TU145116 lncRNA downstream 102973 25356366 ~ 25356581 (-) True G125644
TU145250 lncRNA upstream 39093 25499975 ~ 25500274 (-) True G125771
TU145251 lncRNA upstream 39895 25500777 ~ 25500996 (-) True G125772
TU145254 lncRNA upstream 41896 25502778 ~ 25503003 (-) True G125775
TU145256 lncRNA upstream 44204 25505086 ~ 25505443 (-) True G125777
TU145260 lncRNA upstream 49949 25510831 ~ 25511037 (-) True G125781
XM_036943470.1 mRNA downstream 16038 25434299 ~ 25443516 (-) True LOC110539072
XM_036943476.1 mRNA downstream 18392 25428983 ~ 25441162 (-) False LOC110539072
XR_005035994.1 mRNA downstream 18392 25428983 ~ 25441162 (-) False LOC110539072
XM_021626034.2 mRNA downstream 18392 25434299 ~ 25441162 (-) False LOC110539072
XM_021626051.2 mRNA downstream 18392 25434299 ~ 25441162 (-) False LOC110539072
XM_036943544.1 mRNA upstream 208144 25669026 ~ 25790258 (-) False LOC110539098
XM_036943516.1 mRNA upstream 208144 25669026 ~ 25790259 (-) False LOC110539098
XM_036943525.1 mRNA upstream 208144 25669026 ~ 25790259 (-) False LOC110539098
XM_036943534.1 mRNA upstream 208144 25669026 ~ 25790259 (-) False LOC110539098
XM_036943551.1 mRNA upstream 208144 25669026 ~ 25790259 (-) False LOC110539098
TU144748 other downstream 682927 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 925025 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 1134718 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 1189418 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 1298111 24159167 ~ 24161443 (-) True LOC110538705
TU146650 other upstream 1100732 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 1190494 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 1810378 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 2305275 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 2635800 28096682 ~ 28149986 (-) True LOC110485663

Expression Profile