RNA id: LOC110533704


Basic Information

Item Value
RNA id LOC110533704
length 2915
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110533704
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25417440 ~ 25427699 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aCATTCTTTGATATGTAATTAGTTAAAACCTGCATTTCCCCCTAGCAGGGATgttttgcatgtttcagtgcaaaAATAAAAGTGTCACCTTTCTGGGCCCTCAGCAGTTTGCATCCCTGGTATTGTGTGTGTCCATACCTTGATGACGATAGCAGTCAAACATTTTTGCATTCTTGGTGCCTATTTTGTTTGTGCTATTAATAATTAGGCCAATAGTATGGCCTTCAATACACGTTGAAGTGCTAGCAACTATCCATTATAAAGACTCTAACCATGTGttacccctctgtctgtcagagtgtgCCCAGGGAGGAGGGTACGTctggggaggtggaggagagccCCCTAGTGTCCAGGCTGAGACTGCAGCTAgcccagagggggagagagctccACACCAGAGACGAAGAGCTACTGCTGCAGCACGACACAGAGGTCAGCTCACTGAGACAGGAGAACTACCTCCTGCAGAGCAAGCTGCACAGTACAGAGGAGGCCAACAGCAGGAAGAAGGGCCGGTTGGGTCGCGGTCTGGACGGGCCCTTGGACCCCCTCACTGAGGGCAAACTCAGACTGATAGAGAAAGAGGTGAAGAAACAGGAGACCATCGTCCAGGGATACCAGCAGGAGAATGAGAAGTTGTACCTGCAGATGAAGGCTCTTCAGGCTCAGAGTAAACTCAATGAAGAGGCCATGTTCGCAGAGAACCAGAGGCTGCTAAACGAACTGGCCCTTACCAAAGAGACTGGTGGAGGAGACCCACAGGCTGTGGAGGTGGAACTTCAAAtgatgaggaaagagagagacctgGACAAAGCGCAGGTCGTCTACACCTCAGGGGATAAGAGCTTTGAGCTGCAAGTGGCAGAGGACCGGCATAAGGAGGTGGTGTGTGTTCTGAAGAAGAGGCTCCAGTGGTATGCTGAGAACCAGGAGCTTCTGGACAGAGACTCTGCCAGACTGAGGGCTGCCaccgcagacacacacaaacgcacagagCAGGTGGAAAAGCTGAAGatggaggtggggaagagagccAATCAGAATAAGACTAAAGAGAGAGCTGGAGACGCTAAGAGGATACAGGACCTAGAACGACAGGTGAGTCAGAGATGGAGAAGACTCAGACAGAGGAACCCTAACTCCCTCCCAGCGCTTATCTACGCTGCAGCCAACGCACCTGcagtggaggaggatggaggggccaagagctccccgcccactcagaccagggccctattgGAGCGGCACATCCAGAGGCTGGAGGCGGAGCTAGAGAGCCATGACGACGAGGCCAAACGCAGCCTCCGAGCCATGGAACAGCAGTACCAGCGGATTAAGCTCCAGGATGAGCAGCAGATCAGTGATCTGGAGCAGCAGTTCACCCAGAAACACCCGGTCCAGACCGGGTCACCATGGGGTCTGGCAGGCCCAGGTCTGCTCCCTGCAGCAGGAACTGGAGCTCCTGAAGGAGAACCATCAGACTCGTCCCAGCACCAAGCAGAGACAGCCCTGGGGGTCCGGATAGAGAGACTCAACCAGGGGCTGTCAGCCAAGACCCACAGCATCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCGGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTATCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGAGCCGCACCGTGGAGAGACtccagagggagaggaagaccaTGCTGTGTGGCCCTGGCCCCAGATCAGAGGGCCGTGTTGGGCCTGGGGAGGGCAGGCGGCAGGCGGCCGGATCCAAAGGACCCATGGTGGTGGCTACcccaggggagaggggaggcaaAGTGGGAGAGACCGCAACCTTCCCTCCCACTCAGGATGAGAAGGACTACCAGCCCACAGCGTTCTCTGGGAGCCACATCTCAGGGCTGACAAGACTGTTGGAGGAGCTGAAGCAGGCCAAGGAGTGCCAGAGCTCAGACACTTCACTAGCCTGGAGAGAAAGATCCACAGCATGGAGCTACGACACACTCAGAGGCAGAAAGAGCTCCagcagGTGATAGGTCAGACTCGGCTGGTGGTGGAGGCTGAGCAGCAGTCTGAGGTGGAGCGTTGGAGGAGGCTGGCTCAGGGGAAGACCCGGGAGCTGGAGGTCTTCTGTCTGGAACTGGACTCTATCCTGGACGTCTTGATAGAACTTCAGAGACAGGAAGTGGTCATCCCTGCTCCGGACCGGACTTCTGCTGTACCCTTCAGCTGGAGGACCTGAAACATGGGACATAGGCTCTTTCTAATTACTTACAAATCTGTCCTCACCTTGACCAGGCAAAAGCCAGCCTAATGATGAGCTTCCACTATTTCAGTTAAGTGTTTTTTATTCAATGCAGgggagaagatgaggagaggGCAAATTTGAAAGCAATTCACACAAAAGGTGACTAACTAATTATTCAAATTCATACCATTTGACATTGGCCTATTGTTATCCCCAAGTTGTGGGTTGTTGCTACACATTAACATatcatatttttatatatatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145116 lncRNA downstream 60859 25356366 ~ 25356581 (-) True G125644
TU145115 lncRNA downstream 62164 25354957 ~ 25355276 (-) True G125643
TU145070 lncRNA downstream 126117 25289718 ~ 25291323 (-) True G125598
TU144838 lncRNA downstream 461411 24954905 ~ 24956029 (-) True G125388
TU144799 lncRNA downstream 538092 24874869 ~ 24879348 (-) True G125352
TU145170 lncRNA upstream 13933 25441632 ~ 25441749 (-) True G125693
TU145195 lncRNA upstream 26365 25454064 ~ 25454339 (-) True G125717
TU145250 lncRNA upstream 72276 25499975 ~ 25500274 (-) True G125771
TU145251 lncRNA upstream 73078 25500777 ~ 25500996 (-) True G125772
TU145254 lncRNA upstream 75079 25502778 ~ 25503003 (-) True G125775
XM_036943390.1 mRNA downstream 306857 24871731 ~ 25110583 (-) True LOC110538828
XM_036943381.1 mRNA downstream 306886 24862906 ~ 25110554 (-) False LOC110538828
XM_036943349.1 mRNA downstream 816055 24584393 ~ 24601385 (-) True LOC110538978
XM_036943353.1 mRNA downstream 822055 24584393 ~ 24595385 (-) False LOC110538978
XM_021625867.2 mRNA downstream 876542 24531424 ~ 24540898 (-) False LOC110538887
XM_036943476.1 mRNA upstream 1284 25428983 ~ 25441162 (-) False LOC110539072
XR_005035994.1 mRNA upstream 1284 25428983 ~ 25441162 (-) False LOC110539072
XM_021626034.2 mRNA upstream 6600 25434299 ~ 25441162 (-) False LOC110539072
XM_021626051.2 mRNA upstream 6600 25434299 ~ 25441162 (-) False LOC110539072
XM_036943470.1 mRNA upstream 6600 25434299 ~ 25443516 (-) True LOC110539072
TU144748 other downstream 640813 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 882911 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 1092604 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 1147304 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 1255997 24159167 ~ 24161443 (-) True LOC110538705
TU146650 other upstream 1133915 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 1223677 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 1843561 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 2338458 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 2668983 28096682 ~ 28149986 (-) True LOC110485663

Expression Profile