RNA id: TU144838


Basic Information

Item Value
RNA id TU144838
length 544
lncRNA type intronic
GC content 0.53
exon number 2
gene id G125388
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24954905 ~ 24956029 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtagagaggtagagaggtgagataggtagagcggtagagaggtagagtggtagagcgGTAGAGTGGtagacagGTGGAGAGttagagcggtagagaggtggagcggtagagcggtagagaggtagaggttgagataggtagagaggtagagcggtagagaggtagagaggtgagataggtagagaggtagagcggtagagaggtagagcggtagagaggtagagaggtagagtggtagagagaggtagagaggtagagaggtggagcggtagagaggtagagaggtagagagagcggtagagaggttgagcggtagagaggtagagtggtagagaggtagagaggtagagtggtagagaggtagcgtggtagagaggtagagcggtagagtgatagacaggtggagaggtagagcggtagagaggtggagcggtagagcggtagagaggtagaggttgagataggtagagaggtagagcggtagacaggtagagaggtgagataggtagagaggttgagaggtagagcggtagagaggtagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144799 lncRNA downstream 75557 24874869 ~ 24879348 (-) True G125352
TU144794 lncRNA downstream 98838 24855642 ~ 24856067 (-) True G125347
TU144772 lncRNA downstream 120365 24813644 ~ 24834540 (-) True G125325
TU144714 lncRNA downstream 247196 24707474 ~ 24707709 (-) True G125273
TU144670 lncRNA downstream 269622 24633766 ~ 24685283 (-) True G125230
TU145070 lncRNA upstream 333689 25289718 ~ 25291323 (-) True G125598
TU145115 lncRNA upstream 398928 25354957 ~ 25355276 (-) True G125643
TU145116 lncRNA upstream 400337 25356366 ~ 25356581 (-) True G125644
TU145149 lncRNA upstream 463118 25419147 ~ 25419450 (-) True G125672
TU145153 lncRNA upstream 465962 25421991 ~ 25422466 (-) True LOC110533704
XM_036943349.1 mRNA downstream 353520 24584393 ~ 24601385 (-) True LOC110538978
XM_036943353.1 mRNA downstream 359520 24584393 ~ 24595385 (-) False LOC110538978
XM_021625867.2 mRNA downstream 414007 24531424 ~ 24540898 (-) False LOC110538887
XR_005035978.1 mRNA downstream 414007 24531424 ~ 24540898 (-) False LOC110538887
NM_001160485.1 mRNA downstream 450312 24503806 ~ 24504593 (-) True LOC100301652
LOC110533704 mRNA upstream 461411 25417440 ~ 25427699 (-) False LOC110533704
XM_036943476.1 mRNA upstream 472954 25428983 ~ 25441162 (-) False LOC110539072
XR_005035994.1 mRNA upstream 472954 25428983 ~ 25441162 (-) False LOC110539072
XM_021626034.2 mRNA upstream 478270 25434299 ~ 25441162 (-) False LOC110539072
XM_021626051.2 mRNA upstream 478270 25434299 ~ 25441162 (-) False LOC110539072
TU144748 other downstream 178278 24775220 ~ 24776627 (-) True G125305
TU144590 other downstream 420376 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 630069 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 684769 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 793462 24159167 ~ 24161443 (-) True LOC110538705
TU146650 other upstream 1605585 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 1695347 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 2315231 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 2810128 27766157 ~ 27766532 (-) True G129250
TU149117 other upstream 3140653 28096682 ~ 28149986 (-) True LOC110485663

Expression Profile